BAC Information

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BAC

Clone NameMSMg01-290J03
Chromosome10 (Build37)
Map Location 7,572,419 - 7,573,073
singlet/doubletsinglet
Overlap geneZc3h12d
Upstream geneIyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035
Downstream geneMap3k7ip2, LOC100039046, Ust, Sash1, LOC100039173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290J03.T7 (MSMg01no290_j03.b1)MSMg01-290J03.TJ (MSMg01no290_j03.g1)
ACCAG419812AG419813
length769734
length of high quality
(start - end)
171 (72 - 242)655 (75 - 729)
definitionCHROMAT_FILE: MSMg01no290_j03.b1 PHD_FILE: MSMg01no290_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:10 2005CHROMAT_FILE: MSMg01no290_j03.g1 PHD_FILE: MSMg01no290_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGAACAGCCTGCGCTATACAGAGAAACCCTGGTCTCGAAAAA
AACAAAAACCAAAAACAACAACAACAACAAAAAAACCAAAAATAAACAAA
AAAACAAAAAAAAAGAAAGAAAGAAAGAGAAAAAGAGAAGAGAAGAGGAG
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGGATGTTTG
AGATGATTTGAGATGAGAAGACTTCTGAGGCTTAGACTCTTAGGAGAAGT
GAAACACTGCTTCCTGTCTGGAAGCTCATTTTTTAGGGAAGTAAGCAACT
TATATATCATCAGGAAGTCCTTGATTATGACTAGATTCACTATGCCTCTC
CATGTGAACATAGGCAGTAAGGTTGGCCAATAGTCTTTATCAGTATTAGC
CCAAATTGAGAGGAGGAGGATTATTATTTCTTTTTTAAGTTCTTGTATCA
GCCTTTTCTTTTTTTTAGCTTTCTATTGTTTTGTTAGACTATTTTTCCTT
GGTATTATCCTTTATCTATTTATTTTGTGACTTTTGTGTATCCTTTTATA
TGCTTTTCCTTTGTCTCTTTTTTTTTTTTTGCTTCTTTTTTTTTTTTATT
CTTCTTTTTTTTTTTGTTTCTCTTCTTTTTTCCCCTCCTCTCTTTTTTTT
ATCCTTTTGTTTTTTTATCCTTGCTATTAATTTTTTTTTTACCTCTCTTT
ATATATCTCGGTCTTTTCT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTATGTACACAAGGCTGGCCCAGAA
CTCACAGAGATCCACTTTCCTTGGCTTCCTAAGTGCTGGGATTAAAGATG
TCTGGCTAGGAAGATTATTTTTAAGAGGTCAACAAGATGCATCATGGGCT
CACATAGCCCTTCCTTTTCTGCAATATTGATGTATTTTGTGGGATTTGGG
GGACACTGCTTCCTTGCTTAGACTCTGGAGTCTTGGCATAGCCACTACAA
TCATCTCTGAGGGAGGGCAATTCTACAGATTCCTAATCTTGTCAGTTTCA
TGTTGATTCTTCTTGTTTTCCCCCTTCATTGTTGGTTCTTTTAAGTTCAG
CTAAACAGTGGACAGGTCAATTATTCCTTGGAACATTGTACCACAACCCT
CTACTCTCCATCCCCTGAAACCTGAGCATCCTTATTGAGAGGGGCCTGTG
TTTGTTAGTTTAGTCTGAGGGAAGACTGGACTGCGTTTAAACTTCGCTTT
TGCTCAGTTCCCTCTTAGTTTTGAATCTGTAATCCAGGATATTTCCAGAA
TCTTTTCATGTCTCCTCATATTTCCCTGTCTTCCATTGTAGCCATGGAAA
TAAAGAAGCCTTCTCTTGCCGGGGAATTCGTCTGGCTGTGGACTGGTTTA
GAGACAGAGGACACACCTACATCAAGGTTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_j03.g1 MSMg01no290_j03.g1 CHROMAT_FILE:
MSMg01no290_j03.g1 PHD_FILE: MSMg01no290_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:10 2005
         (655 letters)



>mm_chr10_7572219_7573273
          Length = 1055

 Score = 1212 bits (627), Expect = 0.0
 Identities = 648/655 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgtacacaaggctggcccagaactcacagagatccactttccttggcttcctaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgtacacaaggctggcccagaactcacagagatccactttccttggcttcctaagt 260

                                                                       
Query: 61  gctgggattaaagatgtctggctaggaagattatttttaagaggtcaacaagatgcatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgggattaaagatgtctggctaggaagattatttttaagaggtcaacaagatgcatca 320

                                                                       
Query: 121 tgggctcacatagcccttccttttctgcaatattgatgtattttgtgggatttgggggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggctcacatagcccttccttttctgcaatattgatgtattttgtgggatttgggggac 380

                                                                       
Query: 181 actgcttccttgcttagactctggagtcttggcatagccactacaatcatctctgaggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgcttccttgcttagactctggagtcttggcatagccactacaatcatctctgaggga 440

                                                                       
Query: 241 gggcaattctacagattcctaatcttgtcagtttcatgttgattcttcttgttttccccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggcaattctacagattcctaatcttgtcagtttcatgttgattcttcttgttttccccc 500

                                                                       
Query: 301 ttcattgttggttcttttaagttcagctaaacagtggacaggtcaattattccttggaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcattgttggttcttttaagttcagctaaacagtggacaggtcaattattccttggaac 560

                                                                       
Query: 361 attgtaccacaaccctctactctccatcccctgaaacctgagcatccttattgagagggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgtaccacaaccctctactctccatcccctgaaacctgagcatccttattgagagggg 620

                                                                       
Query: 421 cctgtgtttgttagtttagtctgagggaagactggactgcgtttaaacttcgcttttgct 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 621 cctgtgtttgttagtttagtctgagggaagactggactgtgtttaaacttcacttttgct 680

                                                                       
Query: 481 cagttccctcttagttttgaatctgtaatccaggatatttccagaatcttttcatgtctc 540
           |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 681 cagttccctcttagttttgaatctgtaatccaggatatttccaggatattttcgtgtctc 740

                                                                       
Query: 541 ctcatatttccctgtcttccattgtagccatggaaataaagaagccttctcttgccgggg 600
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcatatttctctgacttccattgtagccatggaaataaagaagccttctcttgccgggg 800

                                                                  
Query: 601 aattcgtctggctgtggactggtttagagacagaggacacacctacatcaaggtt 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aattcgtctggctgtggactggtttagagacagaggacacacctacatcaaggtt 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)