BAC Information

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BAC

Clone NameMSMg01-290J07
Chromosome10 (Build37)
Map Location 93,293,833 - 93,454,271
singlet/doubletdoublet
Overlap geneUsp44, Metap2, Vezt
Upstream geneGm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907
Downstream geneFgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290J07.T7 (MSMg01no290_j07.b1)MSMg01-290J07.TJ (MSMg01no290_j07.g1)
ACCAG419820AG419821
length740739
length of high quality
(start - end)		527 (48 - 574)292 (74 - 365)
definitionCHROMAT_FILE: MSMg01no290_j07.b1 PHD_FILE: MSMg01no290_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:11 2005CHROMAT_FILE: MSMg01no290_j07.g1 PHD_FILE: MSMg01no290_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,453,748 - 93,454,271)(93,293,833 - 93,294,123)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCG
GAATTCCATGACAGTTTTGCCTATACAGGGAAACCCTCTCAGAAAAAAAC
AAAAACAAAAAAACAAAGGGGGGGATGTTTTGCTTCATGTGCTTAAACAT
GAAGAGGGTAATGCAGAACTTGAGGATTTTGATACAAATTCTCTGGACTT
TCACTGTAGCTAGATGAATTGAGCACCCAAGATGTGGTGCCTGTGTACAG
AGCTCCTGGTAAATTAACTCATGCGTGAGCTCCCACTGAACAAGAACAGA
CTGTTAAAAGCCAGACGACATTGCACAGAAAGTAAGATATCCTAGAAGAA
GCTGGAAACATACACAGTATGACACAGAAATAGATTCAGTATAAATGCAA
ATAAAAGGGAAGGAGTGAGGATTGAAAAGAAAAAGATAATTAGGCAACAT
TATAAGATGACTCCAGCCAGTGCTGAGGCTGAAGCAGGCTTATTTCTTTT
TTATATCATTCTAGGTATGTACAAAGAATATGGTCAGTCCTAAGGCCTAA
ACAGGGTAGTTAAGGAACAAACAAAGCCCATTTATAATTATAACCTCTTT
TTACTTCACCAAATCGGTCTTATGATTACTGCCTTCAGGCTCTTAAAAAA
ACCCAGCAAGATACAAAGAACACATTCTTCAACTGTATTCCCCCTTGATC
TACCTCCATGCACGGGGGCCAGATTTCTGCCAAATTTCCN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCATTTCTCCCAAGATGGGCTGTTAA
GAGCAAAGGAAACTCCCTCCACATCACTCTCAAAACCCCATCTTATGCGT
GGCAGCTTTTGGGTCCCCCACCCCCTCTGGATAGGAATTTTAAGGGTATT
TGGGGTTGGCACTACATTATGGAATGTGGAGGGGTAAATAAACAGGGCAA
AGTACTTGCCCCCAAAGAGGTTGCAATGCAAATGGAGAGAACTGGGCTCA
GAACGCTGAACAAAAGCAAGGACGGCATAATAATGTGCTGCTGGGATGGG
GGATGGGAACCCGGTTATTTTCCACCCCCACTCCCTTTTCCTAGGAAAGT
GGTTTTCAGGAGGTGAGAGTTTAGGCCAGCCCTGAAAGAGCTTGATTGTA
ACGATCTAGAAGAGTTGCAACCGGACGAGTTTCTACTTAGGAAACAAACA
TCATTTACCCTGGATTCGAAGGCCGGAAGCACCGAAAGCCTAGCAGACGG
TATCGTCCTAGACGATAAAAGGACCGACCTCTTAGTCTAAAGGCCAATTC
GGCGACTGATTTTAAGGACATAATAGGTAAGTATGGGAGAATCCGCTGAT
GAGGGTGGGAAGGAGGCATCTTTGCAAATACGATAATGAAAAGCTTAGAT
CTGATGAGAGTGGTTTAAAAGCAAAGAGAAATTAAGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_j07.b1 MSMg01no290_j07.b1 CHROMAT_FILE:
MSMg01no290_j07.b1 PHD_FILE: MSMg01no290_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:11 2005
         (527 letters)



>mm_chr10_93453660_93454586
          Length = 927

 Score =  990 bits (512), Expect = 0.0
 Identities = 521/524 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattccatgacagttttgcctatacagggaaaccctctcagaaaaaaacaaaaacaaaa 63
           ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gaattccatgacagttggggctatacagggaaaccctctcagaaaaaaacaaaaacaaaa 553

                                                                       
Query: 64  aaacaaagggggggatgttttgcttcatgtgcttaaacatgaagagggtaatgcagaact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aaacaaagggggggatgttttgcttcatgtgcttaaacatgaagagggtaatgcagaact 493

                                                                       
Query: 124 tgaggattttgatacaaattctctggactttcactgtagctagatgaattgagcacccaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tgaggattttgatacaaattctctggactttcactgtagctagatgaattgagcacccaa 433

                                                                       
Query: 184 gatgtggtgcctgtgtacagagctcctggtaaattaactcatgcgtgagctcccactgaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gatgtggtgcctgtgtacagagctcctggtaaattaactcatgcgtgagctcccactgaa 373

                                                                       
Query: 244 caagaacagactgttaaaagccagacgacattgcacagaaagtaagatatcctagaagaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 caagaacagactgttaaaagccagacgacattgcacagaaagtaagatatcctagaagaa 313

                                                                       
Query: 304 gctggaaacatacacagtatgacacagaaatagattcagtataaatgcaaataaaaggga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gctggaaacatacacagtatgacacagaaatagattcagtataaatgcaaataaaaggga 253

                                                                       
Query: 364 aggagtgaggattgaaaagaaaaagataattaggcaacattataagatgactccagccag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aggagtgaggattgaaaagaaaaagataattaggcaacattataagatgactccagccag 193

                                                                       
Query: 424 tgctgaggctgaagcaggcttatttcttttttatatcattctaggtatgtacaaagaata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tgctgaggctgaagcaggcttatttcttttttatatcattctaggtatgtacaaagaata 133

                                                       
Query: 484 tggtcagtcctaaggcctaaacagggtagttaaggaacaaacaa 527
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tggtcagtcctaaggcctaaacagggtagttaaggaacaaacaa 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no290_j07.g1 MSMg01no290_j07.g1 CHROMAT_FILE:
MSMg01no290_j07.g1 PHD_FILE: MSMg01no290_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:11 2005
         (292 letters)



>mm_chr10_93293633_93294324
          Length = 692

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcatttctcccaagatgggctgttaagagcaaaggaaactccctccacatcactctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcatttctcccaagatgggctgttaagagcaaaggaaactccctccacatcactctcaa 260

                                                                       
Query: 61  aaccccatcttatgcgtggcagcttttgggtcccccaccccctctggataggaattttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccccatcttatgcgtggcagcttttgggtcccccaccccctctggataggaattttaa 320

                                                                       
Query: 121 gggtatttggggttggcactacattatggaatgtggaggggtaaataaacagggcaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtatttggggttggcactacattatggaatgtggaggggtaaataaacagggcaaagt 380

                                                                       
Query: 181 acttgcccccaaagaggttgcaatgcaaatggagagaactgggctcagaacgctgaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttgcccccaaagaggttgcaatgcaaatggagagaactgggctcagaacgctgaacaa 440

                                                              
Query: 241 aagcaaggacggcataataatgtgctgctgggatgggggatgggaacccgg 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcaaggacggcataataatgtgctgctgggatgggggatgggaacccgg 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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