BAC Information

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BAC

Clone NameMSMg01-290K24
Chromosome10 (Build37)
Map Location 113,917,500 - 113,917,836
singlet/doubletsinglet
Overlap geneTrhde
Upstream geneLOC100042655, LOC100042666
Downstream gene4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290K24.T7 (MSMg01no290_k24.b1)MSMg01-290K24.TJ (MSMg01no290_k24.g1)
ACCAG419897AG419898
length668756
length of high quality
(start - end)
133 (129 - 261)337 (390 - 726)
definitionCHROMAT_FILE: MSMg01no290_k24.b1 PHD_FILE: MSMg01no290_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:19 2005CHROMAT_FILE: MSMg01no290_k24.g1 PHD_FILE: MSMg01no290_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATG
TTCAACATCCTTAATCATCAGGTAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGGAGTGCAGGCTTTGTACAACCACTCTGGAAATCAGTCTGGGCGGTCCT
CAGAAAACAGGACCTTAGTACTACCGGGAGGGATCCAGCAATTACCCTTC
CCCGGGGGCCTATATTCCCCAAAAAAAGTTTTTTTTTTTGGTTAAAAACC
CCCCCCCATGGGGTCCCATATAATGGTTTCTAAAGGCGGCCCCCTTTTTT
TTTTTTAAAAATAACCCCCCAAAAACACTGGTGGAAAAAAAAACCCCCCC
CCGGGGGGCGCGCCCCCCCCCCCCCCCCGAAAAAAAAGAAAAGGGGGGGG
GGTTCTCACCAAAAAAAAAGGGGGGGGGGGGGGTTTCCCCTCTCCCCCCC
CCCGCGGGGGGGGGGGGGAAAAAAACCCCCCCCCCTCTTTTTTTTATTAT
AAAAAAAAAAGAAAAGAG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGATTGCACAAGTTTGTCTTTTGG
TATAAACACTTTTCACAGCTATGCTTACCATGTGATAGGGCATCTATTTA
TAGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA
GATAGATAGATAGATAGATAGAAAGACAGAATTACTCTGTGTAACAGCTC
TGACTGTCCTGGAACTCACTTTATAGACAAGGCTAACCATGAACTCACAG
ATATCTACCTGCCTCTGCCTCCCAAGGGCAGGAAGGAAAGGTATGTGAGA
CCATACCTGGGTAGGGTCTTTTTTAATGCCCCCCTCCCTGCAGTTTATTT
TATTTACTGTCCACTGAGAGAAGGGTAGTTCCCTAACTCTTTCAGTAGAC
TCTTTGGAGGGAAGCATTCACGTACGATTATACTGTTAGTAATTTCCTAT
TAATCCACTGGTTTGTGTGTGCAAAAGAATTAAAAAATTTTAAATCCTAG
AAGTGATAAAATTGTTGATTGCAAAACAAGGTTTATTGTTAGCTATATGC
GTCCAGTCCTCTTCATTGAATAAAAGTTTCTGAAATTACTTTACCAGTAT
TCCCCCAGCCTTTTTCCTAGTGGAAACTTTCACATACTATGATCAGTGGG
TCTGAGTGAATCTTTTCTTTTCCTGAGCTTTGTGGTCATCCCCAAAAGAT
CACATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_k24.g1 MSMg01no290_k24.g1 CHROMAT_FILE:
MSMg01no290_k24.g1 PHD_FILE: MSMg01no290_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:19 2005
         (337 letters)



>mm_chr10_113917300_113918036
          Length = 737

 Score =  592 bits (306), Expect = e-173
 Identities = 330/338 (97%), Gaps = 2/338 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagtttattttatttact-gtccactgagagaagggtagttccctaactctttcagtag 59
           |||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct: 537 gcagtttattgtatttactag-ccactgagagaagggtagttccctagctctttcagtag 479

                                                                       
Query: 60  actctttggagggaagcattcacgtacgattatactgttagtaatttcctattaatccac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 actctttggagggaagcattcacgtacgattatactgttagtaatttcctattaatccac 419

                                                                       
Query: 120 tggtttgtgtgtgcaaaagaattaaaaaattttaaatcctagaagtgataaaattgttga 179
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 418 tggtttgtgtgtgcaaaagaattaaaaaaatttaaatcctagaagtgataaaattgttga 359

                                                                       
Query: 180 ttgcaaaacaaggtttattgttagctatatgcgtccagtcctcttcattgaataaaagtt 239
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 358 ttgcaaaacaaggtttattgttagctatatgcttccagtcctcttcattgaataaaagtt 299

                                                                       
Query: 240 tctgaaattactttaccagtattcccccagcctttttcctagtggaaactttcacatact 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tctgaaattactttaccagtattcccccagcctttttcctagtggaaactttcacatact 239

                                                 
Query: 300 atgatcagtgggtctgagtgaatcttttcttttcctga 337
           ||||| |||||||| |||||||||||||||||||||||
Sbjct: 238 atgattagtgggtccgagtgaatcttttcttttcctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)