BAC Information

Click to search

BAC

Clone NameMSMg01-291D02
Chromosome10 (Build37)
Map Location 65,565,159 - 65,565,403
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665206, LOC216036
Downstream gene1700023F02Rik, 4930407I19Rik, Reep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291D02.T7 (MSMg01no291_d02.b1)MSMg01-291D02.TJ (MSMg01no291_d02.g1)
ACCAG420261AG420262
length809813
length of high quality
(start - end)
160 (191 - 350)245 (129 - 373)
definitionCHROMAT_FILE: MSMg01no291_d02.b1 PHD_FILE: MSMg01no291_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:55 2005CHROMAT_FILE: MSMg01no291_d02.g1 PHD_FILE: MSMg01no291_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCTCCTTCTTTTTTTTGCGGGTGCGCCCTTATCCCCCCCACTNTNNN
NCCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAAAG
GCGCGGAATTCTCACCTAATGACTAAAAGAAGGCAGAGAAGCACCTGAAA
AAAATGTTCAACATCCTTAATCATCTTTGACATGAAAATCAAAACAACCA
TGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATGAAAAATTCAGGT
GACAGCAGATGCTGGCTAGGATGTGGAGGAAGAGGAACACTCCTCCATTG
TTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGT
TCCTCAGAAAATTGGACATAGTAGTACTGGATGTATCCCCCAATACCTCT
CCTGGGCACATATCCAGAATATTGTTTTTATCCGCCCCGCACACATGCTC
AACTATGTTCATAGCAGCCTTATTCACCCCCACCAGAAAAAGGAAAGAAC
CCAGATGCCCCTCAACAGAGGAATGGACAAAGAAAACGCGGTACATCTAC
ACTATGGAGTACTACTCAGCCACTAATAAGAATGAATTTACGAAATTCCT
AGGCACACTGGATGGACCTTGGACGGCATCATCCTGAGCGAGGCAATCCA
ACCCCAAACGACCTCCAAACAAATGTACCCACTGCATTAACGCTATCCAC
CCCAAGAATACCTAGCATACTCCAAGACATACGCAATACCATTCTGTTAC
ACATCATTGACTTACCTCCTAACTAAATGTAATATTCTCGCGTGCCGTGA
TATCTTCTG
CTCTTTCCCCCCCCTCTTTCCTCCCCCCCCCCCTTANCCCAGGGGNNGNN
CCTTCTATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGAGCTGAGAAAGATTTCTT
GATGTCAGGCAACTGTAATTTCTTATGCGAGAGAGAGAAGGGGGAGGGAG
AGAGAACAGAAAGATAGAGACAGAGATGACAGACAGACAGAGACAGAGAT
ATGCTTGTATATTTGCATGTGTGCATATGTCTATGTGTGAATGCCTATAT
GTTTGTGTATGGGTGGGCACATATGGGGGTATGTTGGGGTGACATCTTCC
GGAAAAACATCTATCTCCTTTGGCATGTTTTCTCTCCTTGCTGTGCGGTA
CATCCATGAGGATATTTAGATTGACCCCAAAAACAAGCCCATTTCTTTGT
TTTTGANTGACTATTCACTCCCCCCCCTAAAAACAAAAAAAAAATGTTCG
GGGGGGGGGACTGACCCCGCACCGTACTTTGACTCTCACTCTCGCTTGTC
AAGTACCTTCCTGATTGACTATGTCTTTCCGCCCCCTTCTATGCCTCTAT
CTTGCTCCCGACATCACCCGTTTATGCCCTGTCTGCTATTTCCTGTTCTC
CTTTCCCCCTCCCTGCTTCCATCCCTCTTGCACCTTTTCCCCCCCCTGCA
ACCCCTAGTATTCCCATAGTCTCCCCGAACCCCTTTCCGTTCATTTTATC
GTCCTATTTGCCCCCTTTCCTTTTCCCCCATTCTCGCCCCCCTTTTAGCC
TTTATGTTGCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_d02.g1 MSMg01no291_d02.g1 CHROMAT_FILE:
MSMg01no291_d02.g1 PHD_FILE: MSMg01no291_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:55 2005
         (245 letters)



>mm_chr10_65564838_65565482
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgagctgagaaagatttcttgatgtcaggcaactgtaatttcttatgcgagagagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 566 attgagctgagaaagatttcttgatgtcaggcaactgtaatttcttatgtgagagagaga 507

                                                                       
Query: 61  agggggagggagagagaacagaaagatagagacagagatgacagacagacagagacagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agggggagggagagagaacagaaagatagagacagagatgacagacagacagagacagag 447

                                                                       
Query: 121 atatgcttgtatatttgcatgtgtgcatatgtctatgtgtgaatgcctatatgtttgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atatgcttgtatatttgcatgtgtgcatatgtctatgtgtgaatgcctatatgtttgtgt 387

                                                                       
Query: 181 atgggtgggcacatatgggggtatgttggggtgacatcttccggaaaaacatctatctcc 240
           ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 386 atgggtgggtacatatgggggtatgttggggtgacatcttcaggaaaaacatctatctcc 327

                
Query: 241 tttgg 245
           |||||
Sbjct: 326 tttgg 322


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)