BAC Information

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BAC

Clone NameMSMg01-291D24
Chromosome10 (Build37)
Map Location 41,698,636 - 41,698,930
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik, Sesn1, Armc2
Downstream gene1700016J18Rik, LOC624784, Foxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389, Ostm1, Sec63, Scml4, EG666569, C230040G06
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291D24.T7 (MSMg01no291_d24.b1)MSMg01-291D24.TJ (MSMg01no291_d24.g1)
ACCAG420301AG420302
length804754
length of high quality
(start - end)
132 (38 - 169)295 (77 - 371)
definitionCHROMAT_FILE: MSMg01no291_d24.b1 PHD_FILE: MSMg01no291_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:59 2005CHROMAT_FILE: MSMg01no291_d24.g1 PHD_FILE: MSMg01no291_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTC
ACCCCATTTCATCAGGAAAGAATTATAATTCCCTTAAGTTTGGGGTGGTT
GGTTTTGGTTATTTTATCAGCTATAGATATATTGTTATCTAAGGGGAGGT
CATAAGACCTCCTCTAAGAATCTCAGAAAGNNACCTTCTAATTCGTGGTC
CGATGGTTGGGCCGTCTACAACCCTGTTTAATTTCACCAGGCACTTCCGT
GTGTAGAGGTCAAATAGGGGCAAGCGCCTTTCCTTGGGAAGTTTTCCGGA
AGGGGGCCCCTATGTGCCCCTTCCCTTTTTCCCTTTAACCGCTACTACAT
ACGATGCTGGTTTTTTTTTCTTACTTATATATAATTCTTATATCCAAAGT
TTTTAGTTTTAACTTTTCTTTCGGCTTCCTGCTCCTATTTTTTCACATTT
TTTCCCGTTCGGTTTTTATCATTTTCTTTTAATCATCCCCTTATTTCCCC
GACTTTCTCTATTTTCTCTTTATCCCCTAACTTTCCCTTTATTTTCTTCT
TTCTTCGCCGCATGTTTCCACTTTCTCTCGCTTCTTCCCTTTTATCATCT
TACTTACCTCTTTCCTTCCCATTCCGACGTCTTTCTTTTCCTTTTTCCCC
CCTTTCCTTACTTGCCTTATCCTTTCCTTCCTATCCGCTTTTTCCCCCCT
TTTCCCTCCCTTTCCTTCCTTTTCGTTCCTCCGCCTTTCTCCTCTATTCC
CGTTCTTTCCCTTCTTCCCTCCTCGTTTATTTTATTTTCTCGCTTTTCTT
TTCN
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGAAACTGAAGCATGTCTACAAA
CACACAGTGTGGCCCAGTCTTGTTGAACAACTTCAAATTTTAAAAAGGAC
TTTCATCTAGGTTCACTGCTTGCTAAATATAAAAATAATGATTCAACAGG
AAAATTGGGTAAGTCAGGCAAGAAATACTGCCTGTTTTTGAAGATTCTGC
TGTCTCCGTGGTTATAGCTGTTAACCACAGCTTTCAGCTTTGGACCCAAC
AGCTTGATACATTGTTAGCATTGGCTGGTGTTTTTGGCATGCAAACGTAA
ACCCCTTAGCAACAATGTTGTTTTATTTAACCCCCCCCCCCACATTCTTC
TGAGTTCTAGATACATTGCAGGCCACCACTAAATGAAAAAATAACTGGTG
AGGAGCTAGTTTGAAGATAACATCTTTTACACGGTGCTAGATTGATATCA
TTTATCATCATTTTTTATTTTTGTTGAGACAAGGTCTTACTGTAGCTCAG
AATGGCCTGCAATTCATAACCCTGTCTCTGTTTCCAAAATGTTCAGATTA
TAGATGTGTACTCATAGAGCCCGACATAAACTTTTGTGTGAACTGAAAAA
CAACAACTATGAAGAATATAACAGACATTGTCCTACCCTGACTAGTTTGG
TTCCACGCTAACAATGTGCTACGCTTTGAATCCTTTTATTTTACAGACAA
CACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_d24.g1 MSMg01no291_d24.g1 CHROMAT_FILE:
MSMg01no291_d24.g1 PHD_FILE: MSMg01no291_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:59 2005
         (295 letters)



>mm_chr10_41698436_41699130
          Length = 695

 Score =  547 bits (283), Expect = e-160
 Identities = 292/295 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaaactgaagcatgtctacaaacacacagtgtggcccagtcttgttgaacaacttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 201 tagaaactgaagcatgtctacaaacacacagtgtggcccagtcttggggaacaacttcaa 260

                                                                       
Query: 61  attttaaaaaggactttcatctaggttcactgcttgctaaatataaaaataatgattcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttaaaaaggactttcatctaggttcactgcttgctaaatataaaaataatgattcaa 320

                                                                       
Query: 121 caggaaaattgggtaagtcaggcaagaaatactgcctgtttttgaagattctgctgtctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggaaaattgggtaagtcaggcaagaaatactgcctgtttttgaagattctgctgtctc 380

                                                                       
Query: 181 cgtggttatagctgttaaccacagctttcagctttggacccaacagcttgatacattgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtggttatagctgttaaccacagctttcagctttggacccaacagcttgatacattgtt 440

                                                                  
Query: 241 agcattggctggtgtttttggcatgcaaacgtaaaccccttagcaacaatgttgt 295
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 agcattggctggtgtttttagcatgcaaacgtaaaccccttagcaacaatgttgt 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)