BAC Information

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BAC

Clone NameMSMg01-291H20
Chromosome10 (Build37)
Map Location 33,849,887 - 33,996,749
singlet/doubletdoublet
Overlap geneDse
Upstream geneTrdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik
Downstream geneTspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291H20.T7 (MSMg01no291_h20.b1)MSMg01-291H20.TJ (MSMg01no291_h20.g1)
ACCAG420473AG420474
length732747
length of high quality
(start - end)
259 (427 - 685)238 (127 - 364)
definitionCHROMAT_FILE: MSMg01no291_h20.b1 PHD_FILE: MSMg01no291_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:17 2005CHROMAT_FILE: MSMg01no291_h20.g1 PHD_FILE: MSMg01no291_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,849,887 - 33,850,145)(33,996,512 - 33,996,749)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCTT
CATGCCAATAAAGCATTTCCAGCACCCTGACCCTGGCCCATGATGTACAC
TCACCCATATAGCCCTTATCCAACTCCCCAAATAATAGCCTTTGTTCCCC
CACAATTAAACGAGCTGTCTCGCTGAAACTGTCTCCCTAAAAGGCTGCTT
CTCACGTACGCAGTGCTGAGATCCTATTTTGTACTCACCCTAGCTAAGCA
ACATTTCCTCTAGTACAGCCCAGGAGCCTGGATGCCCCGAGGGGAACAAC
AGAACGGGGGTGGCAGATAGTTCACAATAAATTATCTTCCCAGCCACTAG
GTTGTTTTTGTCTCACCACACCACCTATAAATTTTTGACATGGGTCAAGA
AACATTCACCCCTCTCTTAAACCACTTGCCTTCCTAGCTATACACAACAG
AGACTGCCATAGTACCTAGCACTAAAGCTGGACAAAGTGTAGTGAGAGCC
CCTCTTTTCATCTATGGCTAGAAGCCAAGCCCAGATCAGGATTTTTTCAT
GGTGTCATCTTCTTTTCCATGTGTCTTGGCTAATTTCCTTCTCATTGCTA
GATGATTCTTCATCTTCATCCCTCTCATATTTTCTTCCTCATCCATGATT
TTCATATTCCATCAAAAAGAACCTTGCTGTGTTTGTAAACTTTGGGCAGG
CGACTTTATTCAAGTTTTCCATAACTAAACCN
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGACTCAGAACATGGTCTGTGT
TCACCAAGGATGTATGGCACTGGTGCAAAAGATAGAGAAATAATCAAAAC
ATCAGTTGAAAAATGCACCAAGAGATCTAGAGCAAAGGACTCTGGGTAGG
CAAAGGAGGGGTTTCTATGATTGCAATTGATAATAGAACTGAGTCAGGAT
TCATAGAAGAGATAATTCTGAGAAAAATTCTAATAAGAAAAATAAGAGTA
TTACAAGAAAAGGATGTCAGACAAGTTCTAGGCTGACAAAACACAGGCAG
GAGTTGAGCCAGCCTGAGTGGATACCCAGGCTGACCCTTAGGTTCAATGC
TTCCATAAAATGGAATATGCCCCCTTAAAAAAAAAAAACTGAGCTGTTAT
ATGTGTATAATAAATGATAGTGGGTTAAATATAATGATTATATGTGCCTT
CGTTAGTCCTATGGGTGTTAAAGTATTTGGGGTGAGGGTTAAATGGAAGT
TACAAGAATCAAATCAGGAAATAAAACAGCACCATATGGAAGATTGTACC
ATTAAAAGATGGAATAACAACTGTGATATGTTCTTTAAAAACTTAAGCCG
CAATAATCAGGGTATCTTTGAGGACATAATTATAACAAATGACAGTAGAA
AATTAACTAACCGATTACAACATCAGCATCATTTTGAATAGTGACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_h20.b1 MSMg01no291_h20.b1 CHROMAT_FILE:
MSMg01no291_h20.b1 PHD_FILE: MSMg01no291_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:17 2005
         (259 letters)



>mm_chr10_33849687_33850345
          Length = 659

 Score =  501 bits (259), Expect = e-146
 Identities = 259/259 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccttcctagctatacacaacagagactgccatagtacctagcactaaagctggacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccttcctagctatacacaacagagactgccatagtacctagcactaaagctggacaaa 260

                                                                       
Query: 61  gtgtagtgagagcccctcttttcatctatggctagaagccaagcccagatcaggattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtagtgagagcccctcttttcatctatggctagaagccaagcccagatcaggattttt 320

                                                                       
Query: 121 tcatggtgtcatcttcttttccatgtgtcttggctaatttccttctcattgctagatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatggtgtcatcttcttttccatgtgtcttggctaatttccttctcattgctagatgat 380

                                                                       
Query: 181 tcttcatcttcatccctctcatattttcttcctcatccatgattttcatattccatcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttcatcttcatccctctcatattttcttcctcatccatgattttcatattccatcaaa 440

                              
Query: 241 aagaaccttgctgtgtttg 259
           |||||||||||||||||||
Sbjct: 441 aagaaccttgctgtgtttg 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no291_h20.g1 MSMg01no291_h20.g1 CHROMAT_FILE:
MSMg01no291_h20.g1 PHD_FILE: MSMg01no291_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:17 2005
         (238 letters)



>mm_chr10_33996312_33996949
          Length = 638

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagatagagaaataatcaaaacatcagttgaaaaatgcaccaagagatctagagcaaa 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 438 aaaagatagagaaataatcaaaacatcagatgaaaaatgcaccaagagatctagagcaaa 379

                                                                       
Query: 61  ggactctgggtaggcaaaggaggggtttctatgattgcaattgataatagaactgagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggactctgggtaggcaaaggaggggtttctatgattgcaattgataatagaactgagtca 319

                                                                       
Query: 121 ggattcatagaagagataattctgagaaaaattctaataagaaaaataagagtattacaa 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggattcatagaggagataattctgagaaaaattctaataagaaaaataagagtattacaa 259

                                                                     
Query: 181 gaaaaggatgtcagacaagttctaggctgacaaaacacaggcaggagttgagccagcc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gaaaaggatgtcagacaagttctaggctgacaaaacacaggcaggagttgagccagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)