BAC Information

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BAC

Clone NameMSMg01-291K21
Chromosome10 (Build37)
Map Location 93,433,380 - 93,613,774
singlet/doubletdoublet
Overlap geneVezt, Fgd6
Upstream gene4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2
Downstream geneNr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291K21.T7 (MSMg01no291_k21.b1)MSMg01-291K21.TJ (MSMg01no291_k21.g1)
ACCAG420611AG420612
length772782
length of high quality
(start - end)		569 (38 - 606)239 (123 - 361)
definitionCHROMAT_FILE: MSMg01no291_k21.b1 PHD_FILE: MSMg01no291_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:32 2005CHROMAT_FILE: MSMg01no291_k21.g1 PHD_FILE: MSMg01no291_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,433,380 - 93,433,944)(93,613,536 - 93,613,774)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATG
GGTGGTTCCCAGTTACTTACAGATTCCACTGGGTCTACAGGAGACAAGGA
TGTCAACACAGCTTCAAACAACAGAAAGAGGAAAAGAAAAGAAAAAAGGA
AAAAAAATAACTAAGGGCCCAACAACTTTTAAATTCCCACTTATTTTTAA
AAGGAGCAACAAATAAATAAAAACACAATAAAACTTTCTAGTAAAATAAA
TGTAACTTTATAAATATGGGGAGTTTTTTGAGACAAAATACCTAAAGAAA
TGAAACGAGACGGGGACTTGCTGAAGAGTCTGCAGTTCCAAGGCAGTGCT
TCTCAAAGCACGGTCCCTGACTCAGCAGGTCCAGTTATCCCCTAGGAAGC
TGCTGGCAACACCCCCCACAATCTGATCACACATGGGGAACGGGACACTG
GGGTTGGAGGCTGGCATGTTTATAAGCCATCCCGCTTGATTCTGATGCCC
ACTAAAGCCTGGGCCTAATGTGACCCAAAGAACAGCATCTTCACCAAATA
AAAATATATATATGTGTGTGTGTGTGTATATATATATATTAATGAGGTAA
AACATGTAAGTAAATAAATAAATACTGCACCACATCTATTCAATTTACTC
GCTTTCATCTACCCCACCTTGATCGCCCTTTACCCCCTATCCTATCTTTT
GTTTCCCCACCTTAAACCACTCAAGAAAACCTATTTTGTCCTTTATGACC
GCCCTTTTTTCCCTTTTTCACC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCAGGTTTCTTTATTAAAGGGCGCTCCCTCC
GACAGAATCTCCAGATTTAATGCGACCAGTCCCATCACTTTCTCAGCAGG
TTTAAGGGAAGTAATTCATGGAGATGCCACAACTAGTATTCCTATTGCAG
TACCGTTGTTGCTTTGAGATATGTGTATAGGAAGGAAGGAAGCATATCTG
AAAAACTGCTTTGTTGCCCAGTGGGGAGGGAACACAAGCTGGGAAGATAT
TAACCTTAACATCAGTGGATTTTGTTTTGTTTTTTTTTAACAAATGGAGA
CTCACAGCTAATTTGTCTCCTTACCATCCTGCATAGATGTTGATGCAGAA
ATTGTACGAGACCACGCCGCCCTGTGACAGAATTCAAAGTTTGCAGAAAC
AAATGTCCTTTCACTCAGTGATCCATCAGGAGGCACCCGTGGCCAGAAAG
TCTCAAGGCAGTTGTGTTTGGCAGGACTGTTCATCAAAAAGCCATTCTCT
TCGCTCTGTTTCCCTACCCCGGCAAACAGACTCAGCTTACAGAGCCCCTC
AGCATGCAGAGGTGGCTCGCAGGACACTCAAGTTGGAAGGTTGCGAAAGA
TCTTGGTGGAACAGAAACCCGATTTGGTTAGATTTGATTTTGGGGGNTTT
TGGNCTTTNNTTNNAAAAGGATTTTTGGGANCTAAAATGTTATTTTGAAA
AAATTTTTTAAATATTAAGGGTGTTATTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_k21.b1 MSMg01no291_k21.b1 CHROMAT_FILE:
MSMg01no291_k21.b1 PHD_FILE: MSMg01no291_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:32 2005
         (569 letters)



>mm_chr10_93433176_93434144
          Length = 969

 Score = 1031 bits (533), Expect = 0.0
 Identities = 557/565 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgggtggttcccagttacttacagattccactgggtctacaggagacaaggat 64
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgggtggttctgagttacttacagattccactgggtctacaggagacaaggat 264

                                                                       
Query: 65  gtcaacacagcttcaaacaacagaaagaggaaaagaaaagaaaaaaggaaaaaaaataac 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcaacacagcttcaaagaacagaaagaggaaaagaaaagaaaaaaggaaaaaaaataac 324

                                                                       
Query: 125 taagggcccaacaacttttaaattcccacttatttttaaaaggagcaacaaataaataaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagggcccaacaacttttaaattcccacttatttttaaaaggagcaacaaataaataaa 384

                                                                       
Query: 185 aacacaataaaactttctagtaaaataaatgtaactttataaatatggggagttttttga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacacaataaaactttctagtaaaataaatgtaactttataaatatggggagttttttga 444

                                                                       
Query: 245 gacaaaatacctaaagaaatgaaacgagacggggacttgctgaagagtctgcagttccaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gacaaaatacctaaagaaatgaaacgagacggggacttgctgaagagtctgcagttccaa 504

                                                                       
Query: 305 ggcagtgcttctcaaagcacggtccctgactcagcaggtccagttatcccctaggaagct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggcagtgcttctcaaagcacggtccctgactcagcaggtccagttatcccctaggaagct 564

                                                                       
Query: 365 gctggcaacaccccccacaatctgatcacacatggggaacgggacactggggttggaggc 424
           ||||||||||   || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctggcaacagatcctagaatctgatcacacatggggaacgggacactggggttggaggc 624

                                                                       
Query: 425 tggcatgtttataagccatcccgcttgattctgatgcccactaaagcctgggcctaatgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggcatgtttataagccatcccgcttgattctgatgcccactaaagcctgggcctaatgt 684

                                                                       
Query: 485 gacccaaagaacagcatcttcaccaaataaaaatatatatatgtgtgtgtgtgtgtatat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gacccaaagaacagcatcttcaccaaataaaaatatatatatgtgtgtgtgtgtgtatat 744

                                    
Query: 545 atatatattaatgaggtaaaacatg 569
           |||||||||||||||||||||||||
Sbjct: 745 atatatattaatgaggtaaaacatg 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no291_k21.g1 MSMg01no291_k21.g1 CHROMAT_FILE:
MSMg01no291_k21.g1 PHD_FILE: MSMg01no291_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:32 2005
         (239 letters)



>mm_chr10_93613336_93613974
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgaccagtcccatcactttctcagcaggtttaagggaagtaattcatggagatgccacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cgaccagtcccatcactttctcagcaggtttaagggaagtaattcatggagatgccacaa 380

                                                                       
Query: 61  ctagtattcctattgcagtaccgttgttgctttgagatatgtgtataggaaggaaggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctagtattcctattgcagtaccgttgttgctttgagatatgtgtataggaaggaaggaag 320

                                                                       
Query: 121 catatctgaaaaactgctttgttgcccagtggggagggaacacaagctgggaagatatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 catatctgaaaaactgctttgttgcccagtggggagggaacacaagctgggaagatatta 260

                                                                      
Query: 181 accttaacatcagtggattttgttttgtttttttttaacaaatggagactcacagctaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 accttaacatcagtggattttgttttgtttttttttaacaaatggagactcacagctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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