BAC Information

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BAC

Clone NameMSMg01-292G16
Chromosome10 (Build37)
Map Location 48,290,810 - 48,291,095
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041663, LOC100042398
Downstream geneLOC546562, LOC100041689, Grik2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292G16.T7 (MSMg01no292_g16.b1)MSMg01-292G16.TJ (MSMg01no292_g16.g1)
ACCAG421142AG421143
length758749
length of high quality
(start - end)
590 (46 - 635)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no292_g16.b1 PHD_FILE: MSMg01no292_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:28 2005CHROMAT_FILE: MSMg01no292_g16.g1 PHD_FILE: MSMg01no292_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGGATCAAAAAGGCATGGAAAAATTTGAACGTCATGTCGAGCTG
GTATTGGCTTCTGGAACACCGAACGGATCTCCCATCTCTGCTCCATCGTT
TGTACTTGTGGGACCATCCACCACATCCACAGGGGCAACTGGATCAGGAG
CCTCATTCTTGCAGCGTCTCACCAACCTCTCCAGCACCCAAAGAGGTTCC
GTCTGGTCCTGTGGAAACACACAAACAGACCCTCTCTCCCACATCAACAC
CGGATCTGGTCGATCCCAGGGGAGATGGACACAATACCTTGTGGTGATGA
GACCATAACCTCTTTCACCCTTGCGTCCATCTGGGGAGTCAATATGAGAG
TCAAGTTTTCACTGCCCTCCCCTCTGTTGAGCAATGATTTCCACGCCCTT
ATAGCAATCTGATTCACCTGCTCAAACACCTGCAGTGAATATCCTGTTTG
TTGTTGTGCAAATCGACCTTGACCAAGCAGCATATCCCTATCCCATGCTG
TATTTCCTGCAGCAGAGTTAGCCACTGCCTGTTCATTTGTAAATTCAATA
AGGAAGGCTTTCCAATCTGAATACTGCCCAGGTGAAAGCCAAGCCTGCCC
AATCAGACTGCATCATACAGTGTCTATTCAAGGTCCTCTACTTGAGCCCC
AGTATAGGAAGCACTTAAGGCCGCATGGTCCCAAACGGATTCTGGCAAAT
TTCTTATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGTTAAAAATAATAGCTTTCA
TAGTTAAAATTCTTTCCAAATATTTTAGTTCTCATTTTTAATAAAAGACA
GCAAAGCCTTCTAATAGCACTAATTGTTAAGATTTAACGTGTAAGTAAGA
GAGGTAATTTTCACCCTCTGGTTCTTCTCTACGTAAGCGAGTATAATAAT
CTGAAGAGGTGTTAACCGATTTACCTAACTACTGAGAGTATTAATTCTCT
GCTTCTCATTATTAGCACTTGACCTGTTACTGACCTCCAACTCTATGCAC
TAATGAGATTTGCTTTTATGGTAAGGACAACAATCCATTGATTTAAAAGA
GAAAATTACTCAATTATCACTGCCCTACAAAAATGACTAAAACTAAAAAG
ACATCAAAACCAATCAATACCAGATTTATCATCAAATCAAGTGAAATATC
AGAAAATGAAATTTGGAATACAAGGAAAGTTATTGCCAACAGGGTAAAAA
TAATGACACAATTAGAATATTAAATGAATGAGTTAATGCATAAGACAAAC
TTAGAATAATGATCTTTATTTTGTAACATAATCTGTTGATTATGAAGTCA
TATTGGTGAGTATGAATTATGTTATCCTTTTTTTTTTCCGTTTCCACCTT
GTTACCATTCTTACTATTTTGCTTTTTTTCCCCTTCACCCCCTTCTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_g16.g1 MSMg01no292_g16.g1 CHROMAT_FILE:
MSMg01no292_g16.g1 PHD_FILE: MSMg01no292_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:29 2005
         (292 letters)



>mm_chr10_48290607_48291295
          Length = 689

 Score =  528 bits (273), Expect = e-154
 Identities = 284/289 (98%), Gaps = 3/289 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   agttaaaaataatagctttcatagttaaaattctttccaaatattttagttctcattttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agttaaaaataatagctttcatagttaaaattctttccaaatattttagttctcattttt 430

                                                                       
Query: 64  aataaaagacagcaaagccttctaatagcactaattgttaagatttaacgtgtaagtaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 429 aataaaagacagcaaagccttctaatagcactaattgttaagatttaacatgtaagtaag 370

                                                                       
Query: 124 agaggtaattttcaccctctggttcttctctacgtaagcgagtataataatctgaagagg 183
           ||||||||||||||||||||||||||||||||||||||| ||||||||   |||||||||
Sbjct: 369 agaggtaattttcaccctctggttcttctctacgtaagccagtataat---ctgaagagg 313

                                                                       
Query: 184 tgttaaccgatttacctaactactgagagtattaattctctgcttctcattattagcact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgttaaccgatttacctaactactgagagtattaattctctgcttctcattattagcact 253

                                                            
Query: 244 tgacctgttactgacctccaactctatgcactaatgagatttgctttta 292
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgacctgttactgacctccaactctatgcactaatgagatttgctttta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 689
Length adjustment: 9
Effective length of query: 283
Effective length of database: 680
Effective search space:   192440
Effective search space used:   192440
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)