BAC Information

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BAC

Clone NameMSMg01-293J06
Chromosome10 (Build37)
Map Location 43,534,794 - 43,535,090
singlet/doubletsinglet
Overlap genenone
Upstream geneSec63, Scml4, EG666569, C230040G06, Sobp, 9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik
Downstream geneEG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293J06.T7 (MSMg01no293_j06.b1)MSMg01-293J06.TJ (MSMg01no293_j06.g1)
ACCAG421993AG421994
length872774
length of high quality
(start - end)
112 (45 - 156)297 (77 - 373)
definitionCHROMAT_FILE: MSMg01no293_j06.b1 PHD_FILE: MSMg01no293_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:02 2005CHROMAT_FILE: MSMg01no293_j06.g1 PHD_FILE: MSMg01no293_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTACAGATCCAAAGGTAAGAAGGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATATAAG
TGGGTGTGCNTCCTGCCCTGAGCCCCTCGCTCCCCACCGACCTCTCCTCG
CCCCCTCTTCCCCCCCTCTGCCCCTCTGTCTTCCCCTCTCCCTCTCCCCC
CCTTCCCCCTCCTCCCTCTTCCTCTTCCCTCCTCCCCTCCTGCCCTGTCC
TCCCTGGTCCTCCGTCCCCCCCCCTCCTCTCTTTTCTCCCCTCCTTCCCT
CTTCTTCCCCTCTTTCNTTTGTTTTTTTTTTTTTCCCCCCCCCCCCCCCC
CCTTTCTCCTTTTTCTTTTCCTTCCTCTTCTTTTCCCCCCCCCCTCCTCC
TCCACCCTACTCTCTTTTCTCCCCGCCCCCCCCCTCTTTCCCCCTCCCCT
CCCCCCCCCTCTTTCTTCTCTTCTTCCCTTCCCTCTCCCCCCCTCTTTCC
CTCTCCTTCCCTTTCCTCTTTTTTCCTCCCTCCTCTCCCCCTTTTTCCCC
CTCCCCTTCCCTCCCTCTTCTTCCTCCCCCTTCTCCCCTCTTTCTTTCTC
CTCTTCTCTTTTCCTCTCTTCTCCTCCTCCCCCCCTTCCCCCTTGCCTCT
TCCCCCTTCCTCTCCCTCTTCTTTCTCTTCCCCCTTTTCCCCCCTTTCTC
CCTTTCCCCTTCCTTTTCTTCCCGTCCCCCCCTCCTTTCTTCCTCCCTCT
CTTCCCCCCCCTCTTCCTTCTATTAATTCTTTTTTCCTCTCCTCCCCTCT
CCCCTTCCTTTCTTCCTCCCTC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGCTAAAATGAATAGTGTTCCT
TGAAAAGAGAACTTCAAAGAACCCAAACCCAGATGACTTCCGGACGGAAC
TAAAACAGGGCTTCCACATTAGAGAGGGAGTGCCAAGATGGCAAGACTGC
TGTCCAGATGCAGGGCCAAGGAGGACTGTGGGTAATAGTCAGGTGCAAGC
CAGTACCCAGACAGACCCCAGGGCAAAAGAAGACACAAAAAACATGTCTT
GTTTTACTCCATAAGCAGACACAGTTTGGTTGAAAATACTGTCTGCCAGA
GCATTTGCCTCCTGGAGAAATTATTTCATTTCCTCTTGCACACCTGTTTC
TAACAGACAGACTGGAGTGTTGGCCGCCCTGCAACGATATAACATTTCAG
TTAGTTAATGACCTCAAGAGTCCACATGCCCTGGCCAGTGGGGCTTATCT
CTTATTTAAACATGGAAAGAAAGCGGCTGAATGGTTGAGTTAGTGAGGCT
GTGCAAACACAGACAGGTGCTCTGTCACGGTTTGCAGCACAGAGCCCACA
AGAAGAAAGATAAGGGAACACAATTCAGTTTTTAAACCAGTAAGCAGGTT
TTACTCAGTGAGCAACTGACCAGATGCTGGACTTCGTTCAACTTATCTCC
ACAACCAGGAGCTGCTGAAGTTACCCCTAGAAAAAGGGTTGGACGTCTGC
TTGGGACTTCCTCTGTGGATGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_j06.g1 MSMg01no293_j06.g1 CHROMAT_FILE:
MSMg01no293_j06.g1 PHD_FILE: MSMg01no293_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:02 2005
         (297 letters)



>mm_chr10_43534594_43535290
          Length = 697

 Score =  567 bits (293), Expect = e-166
 Identities = 296/297 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgctaaaatgaatagtgttccttgaaaagagaacttcaaagaacccaaacccagatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgctaaaatgaatagtgttccttgaaaagagaacttcaaagaacccaaacccagatga 260

                                                                       
Query: 61  cttccggacggaactaaaacagggcttccacattagagagggagtgccaagatggcaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttccggacggaactaaaacagggcttccacattagagagggagtgccaagatggcaaga 320

                                                                       
Query: 121 ctgctgtccagatgcagggccaaggaggactgtgggtaatagtcaggtgcaagccagtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgctgtccagatgcagggccaaggaggactgtgggtaatagtcaggtgcaagccagtac 380

                                                                       
Query: 181 ccagacagaccccagggcaaaagaagacacaaaaaacatgtcttgttttactccataagc 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ccagacagaccccagggcaaaagaagccacaaaaaacatgtcttgttttactccataagc 440

                                                                    
Query: 241 agacacagtttggttgaaaatactgtctgccagagcatttgcctcctggagaaatta 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacacagtttggttgaaaatactgtctgccagagcatttgcctcctggagaaatta 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)