BAC Information

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BAC

Clone NameMSMg01-294F24
Chromosome10 (Build37)
Map Location 126,753,703 - 126,753,993
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075
Downstream geneArhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294F24.T7 (MSMg01no294_f24.b1)MSMg01-294F24.TJ (MSMg01no294_f24.g1)
ACCAG422565AG422566
length732729
length of high quality
(start - end)		321 (50 - 370)292 (81 - 372)
definitionCHROMAT_FILE: MSMg01no294_f24.b1 PHD_FILE: MSMg01no294_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:03 2005CHROMAT_FILE: MSMg01no294_f24.g1 PHD_FILE: MSMg01no294_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTCTCAGGCCTAGACCTCCACAGATTCCAGCATGACAATA
CATAGAGCAACAGGCCAAACCTCAACAGGTCACATGCCCCTCACCAAAAT
AAATAAACATAGTTGTTTTTTACAATGTGAAACCATGGAACTAGAGAGAA
GGCTGAACATTTAAAAGAACATCCTTCTGCTGCAGAGGATCTGAGTTCAG
TTCACAGCAACTATGTTGAACAACTCACAACTACCTGTAACTACAACTTC
AGGGGATCCAGCGCCCTCTTCTGGTCTCCACAGGCAGATGCACTTATGTG
CACAGACACACATGAATGCTTTCTTATTTTCCCCCCCCCCCACATCCATA
TCAATAAACGTTTTATTCTCTAGTATATTAGAATCAAAAAATAAAAGACT
CAGGATATTTCATAAAGGCCATATATTAGATAAAAGTTTCCATATGTATT
TATAAAATATTAGGACAAATTTTTATACAATCACCATCACTACATCATGA
CGTCTGACAAAAAATAAAGGCACTGCTGTTTGATCAGTATTGGATGCTCA
ACCTAAAGCATAGTACATGCTACCATTGAACTATAATATAGCCTTAGCCC
TTATGAATTTTGAAAATTTGTTCATGTTTGACTAGTGTATAAATATGGTT
TTCATACACATGTATTATTGTACCTTGCTCAN

NCCTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCTAGGACTATAC
AGAGAAACACTGTCTCAAAAAAAAAAAAAATGGTGTCTGACTATGTAGAC
CTGGCTAACCTGGAGCTCACTCTGTTGACCAGACTGGCCTCAAACTCACA
GAAATCTGCCTGCCTCTGCTATCTGGGTGCTGGGGTTAAACCCACCACAC
CAGCCTAGCCCTTGAATTTTTAGGAAGGGTCTTGCTATGTGGCTCAGGAC
TGAAGAAACCACTCGCTCAGCAGTTAAAAGCATTGGCCGTTCAGTTCCCA
CGTAGTGGCTTTTCATCACCTTTTTTTTCTTCCCCCCCACACATCCAACA
CTCTCTTCTGACCTCTATGGGGCACCAAGTACTCATGAGATAGAAAACAC
TCACATGCGATCGAAACATCTATACACATAGCACTTATCCTAAGGAGGAA
AATATTATTTTGAGATAGGGTTGCACGTAGCCCAGGCTGGCCTTGAACTG
ACTATGTAGGTGAAAATGACCTTTAACTCCTGATGCTTCTGTACCCCAAG
TTTTGGAACTCTAGGCTTATACAGTGTCTGGCTTTCCTAATTTTATAAAC
GTGTGTGAGTGTACATGAGTGCTGGAAACCAAACCCTGACCTTCTGCAAG
ACAAACGCTCTTAGCCAGTGAGCCACGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_f24.g1 MSMg01no294_f24.g1 CHROMAT_FILE:
MSMg01no294_f24.g1 PHD_FILE: MSMg01no294_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:03 2005
         (292 letters)



>mm_chr10_126753332_126754023
          Length = 692

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%), Gaps = 1/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagctaggactatacagagaaacactgtctc-aaaaaaaaaaaaaatggtgtctg 59
           |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| 
Sbjct: 662 caggacagctaggactatacagagaaaccctgtctcaaaaaaaaaaaaaaatggtgtctc 603

                                                                       
Query: 60  actatgtagacctggctaacctggagctcactctgttgaccagactggcctcaaactcac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 actatgtagacctggctaacctggagctcactctgttgaccagactggcctcaaactcac 543

                                                                       
Query: 120 agaaatctgcctgcctctgctatctgggtgctggggttaaacccaccacaccagcctagc 179
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 542 agaaatctgcctgcctctgctatctgggtgcttgggttaaacccaccacaccagcctagc 483

                                                                       
Query: 180 ccttgaatttttaggaagggtcttgctatgtggctcaggactgaagaaaccactcgctca 239
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ccttgaaattttaggaagggtcttgctatgtggctcaggactgaagaaaccactcgctca 423

                                                              
Query: 240 gcagttaaaagcattggccgttcagttcccacgtagtggcttttcatcacc 290
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gcagttaaaagcattggccgttcagttcccacgtagtggcttttcatcacc 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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