Query= MSMg01no294_j04.b1 MSMg01no294_j04.b1 CHROMAT_FILE:
MSMg01no294_j04.b1 PHD_FILE: MSMg01no294_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:17 2005
(404 letters)
>mm_chr10_101066092_101066893
Length = 802
Score = 716 bits (370), Expect = 0.0
Identities = 392/400 (98%), Gaps = 2/400 (0%)
Strand = Plus / Plus
Query: 5 gaattcactacctgcatcacatattataaatgaagtatgctctaattaaaactttgcaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactacctgcatcacatattataaatgaagtatgctctaattaaaactttgcaag 264
Query: 65 ggtaaatttaaaattatctaagtataaaactcttagagcttttatttctaaagataatta 124
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 ggtacatttaaaattatctaagtataaaact--tagagcttttatttctaaagataatta 322
Query: 125 tggaagtctcttagttaatcttttcttagaatatttaaatgaaaatcatgtgtattttaa 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 323 tggaagtctcttagttaatcttttcttagaatatttaaatgaaaaccatgtgtattttaa 382
Query: 185 aataatattagtaataaatgattgggataattaagtaattgttgttatttaatcatattt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aataatattagtaataaatgattgggataattaagtaattgttgttatttaatcatattt 442
Query: 245 aatagtctaaatggagactttgaacgtgagggtggtaggaacagaaatgatatgtataac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aatagtctaaatggagactttgaacgtgagggtggtaggaacagaaatgatatgtataac 502
Query: 305 tcctcaaggttctgaatctattttgtgctacgaaccatacacactatagtccaaaatcta 364
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 503 tcctcaaggttctgaatctagcttgtgctaggaaccatacacactatagtccaaaatcta 562
Query: 365 cttgttggcactgtacagtacaaatctctagtctttaata 404
||||||||| ||||||||||||||||||||||||||||||
Sbjct: 563 cttgttggctctgtacagtacaaatctctagtctttaata 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 802
Length adjustment: 9
Effective length of query: 395
Effective length of database: 793
Effective search space: 313235
Effective search space used: 313235
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no294_j04.g1 MSMg01no294_j04.g1 CHROMAT_FILE:
MSMg01no294_j04.g1 PHD_FILE: MSMg01no294_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:17 2005
(575 letters)
>mm_chr10_101221948_101222922
Length = 975
Score = 733 bits (379), Expect = 0.0
Identities = 498/569 (87%), Gaps = 58/569 (10%)
Strand = Plus / Minus
Query: 8 actgtgacatcaactttcaacaaaacatgactcattttattgaacagatatagattcata 67
||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 975 actgtgatatcaactttcaacaaaacgtgacttattttattgaacagatatagattcata 916
Query: 68 ttacatggaataacattaaagaatctaagaatggttaatccccccaagtaaacagattaa 127
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 ttacatgaaataacattaaagaatctaagaatggttaatccccccaagtaaacagattaa 856
Query: 128 tagagctcacactgaatattttttatacaattatatatatataatatatataaatatata 187
|||||||||||||||||| ||||||||||||| | ||||||| |||||||| |||||||
Sbjct: 855 tagagctcacactgaata-tttttatacaatt-t-tatatat-atatatat--atatata 802
Query: 188 ttatatataaatatataatatatatttatatataatatatatttataattataatatata 247
| |||||||| |||||||| |||||||
Sbjct: 801 t----------------atatatat---------atatatat-----------atatata 778
Query: 248 ataatatatatattacgtaaatgtagataacaaatgtgtgaaaacattttcaatatccca 307
|| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 777 at--------------gtaaatgtagataataagtgtgtgaaaacattttcaatatccca 732
Query: 308 agaaattcagtcagagcacaaccagagtgactcagagagaacaaaactgcagcatgagca 367
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 731 agaaattcagtcagagcacaaccagagtgactcagatagaacaaaactgcagcatgagca 672
Query: 368 agagataaacaatggggaggggtgtgttctc-ataatatgcattctacagaggtgaggta 426
||||||||||||||||||||||||||||||| | ||||| ||||||||| ||| ||||||
Sbjct: 671 agagataaacaatggggaggggtgtgttctcta-aatattcattctacaaaggcgaggta 613
Query: 427 tagatcatctttgataaatgagaacatagagtaagtctcaggaaaattgcttaattcctg 486
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 612 tagatcatctttgataaatgagaacgtagagtaagtctcaggaaaattgcttaattcctg 553
Query: 487 actggaattaagcaacataaccctaaggtatccatcttccagcacagtacattttcagaa 546
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 552 actggaattaagcaacataatcctaaggtatccatcttgcagcacagtacattttcagaa 493
Query: 547 aggactttaaatttaatggcattttatcc 575
|||||||||||||||||||||||||||||
Sbjct: 492 aggactttaaatttaatggcattttatcc 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
