BAC Information

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BAC

Clone NameMSMg01-295F20
Chromosome10 (Build37)
Map Location 125,883,998 - 126,060,696
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042992, LOC668317, LOC100042994, Lrig3, LOC100043547
Downstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295F20.T7 (MSMg01no295_f20.b1)MSMg01-295F20.TJ (MSMg01no295_f20.g1)
ACCAG423278AG423279
length732728
length of high quality
(start - end)
314 (47 - 360)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no295_f20.b1 PHD_FILE: MSMg01no295_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:17 2005CHROMAT_FILE: MSMg01no295_f20.g1 PHD_FILE: MSMg01no295_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,883,998 - 125,884,307)(126,060,412 - 126,060,696)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGAGCACATCACCACACCCAGCTTTTTAGGTGGGTGCTGGAG
TTCTGTGTTCAGATCCTCACCTTTCTGTGGCAAGTTCCCCAGCCCCTTTC
ACTGGCTGATATTCAAATTTCAACTTTTAAGAGACTCTTGTATCAAAACC
TGTGCATAAAAAGGATCAAAACAGCATTGTTCCCTCAGTGAAGACACTGG
AAAAATTCTAGTGGCAATTCTGCTGGCTGGTTTTATGTCAACTTGACACA
AGCTAAAGTCATCTGAGAAGACAGATCCTCAATTGAGAAAGTGCCTCCAT
AAGATCTGGATATATTTCTTTTTCCCCCCCCCCCGCCGGATGCAGGAGGG
CTCAGCCCATCATGAGTGCCGCCACAAAAAAAAAAAAAAACCTGGGAGCG
GTGGGAAAGCAGGTGAAGCAAGCCATGATGAGCAAGCCAGTAAGCAGCAC
CCCTCCATGGTCTCTGCATCAGCTCCTGCCTCCAGGCTCCTGCCTTTTTG
AGTTCCTGTCCTGACTTCCGTCATTGATGAACAGTGATATGGATGTGTAA
GCCCAATAAACCCTTTTCTCCCTAAGATGCTTTGGTTATGGTGCTTCATC
ACAACAGTCCTAACCTTAACTATGGTACAACTAAACAATACTGATTACCT
GAATGTTCCTAACTGTCCAAAATACATTCCTC
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAGAGGCCCATTTACACAGAGGGA
ATTCGGTTCAGTTTTAATGTTGATTGCATCTAAAGATAAGACGAAAGCAG
CATCTACACGTGTTTGAGTGAATATCAGGCTGTGGCAGCTTAGATAATTC
AGCACACAGCATCAATCATGTTAATATTGGAAGGTCACGTCAGAGTAGAG
AGATGAGATTGAAGGGGATGGGCAGAGTCCCAGTGGCAAGGCATCAGTGG
CGAGGGGTGCAAGGTTGTTTATTATCCCATCATTATCTCATTCCTGCTTT
ACCTTTGCACTGGAGTGNGTTCCNAGTCANNACCCAGAGACCTCTGAGAG
TCCTCTGACCACCCGCTCCCCTCAAGAAAAAAAGAAAATTTAGATGAGGG
GGAGGGCCTTTCTTTTTCACCCTTTACCATTTTCACAGAAGGCAAAGCCT
CTCTACCAATAGAAGGGAGAGACAGCCGACCGCACATTGCTTGATGAAAG
TGTTTCCGCTCTATCTGTTGAGCTGTTGCATTTATACCTCTGCGGATCTC
TGGTCCAGCACGTGTCCCCCATTTGCCCCTTGAGATCCCCTCTGCTCTCC
TGTTGAACCCTTCATTGCGCCTGACCTTGCCTTCCATCTCTGTGACACTT
AGCACGTTGCATACCCTTGTCCTGCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_f20.b1 MSMg01no295_f20.b1 CHROMAT_FILE:
MSMg01no295_f20.b1 PHD_FILE: MSMg01no295_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:17 2005
         (314 letters)



>mm_chr10_125883794_125884507
          Length = 714

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggagcacatcaccacacccagctttttaggtgggtgctggagttctgtgttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggagcacatcaccacacccagctttttaggtgggtgctggagttctgtgttc 264

                                                                       
Query: 65  agatcctcacctttctgtggcaagttccccagcccctttcactggctgatattcaaattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 agatcctcacctttctgtggcaagttccccagcccctttcactggctgatattgaaattt 324

                                                                       
Query: 125 caacttttaagagactcttgtatcaaaacctgtgcataaaaaggatcaaaacagcattgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caacttttaagagactcttgtatcaaaacctgtgcataaaaaggatcaaaacagcattgt 384

                                                                       
Query: 185 tccctcagtgaagacactggaaaaattctagtggcaattctgctggctggttttatgtca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccctcagtgaagacactggaaaaattctagtggcaattctgctggctggttttatgtca 444

                                                                       
Query: 245 acttgacacaagctaaagtcatctgagaagacagatcctcaattgagaaagtgcctccat 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 acttgacacaagctaaagtcatctgagaagacagagcctcaattgagaaagtgcctccat 504

                     
Query: 305 aagatctgga 314
           ||||||||||
Sbjct: 505 aagatctgga 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no295_f20.g1 MSMg01no295_f20.g1 CHROMAT_FILE:
MSMg01no295_f20.g1 PHD_FILE: MSMg01no295_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:17 2005
         (285 letters)



>mm_chr10_126060212_126060896
          Length = 685

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagaggcccatttacacagagggaattcggttcagttttaatgttgattgcatctaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 taagaggcccatttacacagagggaattcggttcagttttaatgttgattgcatctaaag 426

                                                                       
Query: 61  ataagacgaaagcagcatctacacgtgtttgagtgaatatcaggctgtggcagcttagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ataagacgaaagcagcatctacacgtgtttgagtgaatatcaggctgtggcagcttagat 366

                                                                       
Query: 121 aattcagcacacagcatcaatcatgttaatattggaaggtcacgtcagagtagagagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aattcagcacacagcatcaatcatgttaatattggaaggtcacgtcagagtagagagatg 306

                                                                       
Query: 181 agattgaaggggatgggcagagtcccagtggcaaggcatcagtggcgaggggtgcaaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agattgaaggggatgggcagagtcccagtggcaaggcatcagtggcgaggggtgcaaggt 246

                                                        
Query: 241 tgtttattatcccatcattatctcattcctgctttacctttgcac 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tgtttattatcccatcattatctcattcctgctttacctttgcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)