BAC Information

Click to search

BAC

Clone NameMSMg01-296F23
Chromosome10 (Build37)
Map Location 21,249,923 - 21,414,550
singlet/doubletdoublet
Overlap gene1700020N01Rik, EG432436
Upstream genePde7b, LOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906
Downstream geneLOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296F23.T7 (MSMg01no296_f23.b1)MSMg01-296F23.TJ (MSMg01no296_f23.g1)
ACCAG424002AG424003
length807751
length of high quality
(start - end)		319 (45 - 363)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no296_f23.b1 PHD_FILE: MSMg01no296_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:33 2005CHROMAT_FILE: MSMg01no296_f23.g1 PHD_FILE: MSMg01no296_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,414,237 - 21,414,550)(21,249,923 - 21,250,211)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCATTGCCTAGAAGCGATGGGGCTGAGTTAACACATAGTAGGATC
TCTGAAAGCAGGAGACTGAAAGATGTTTCCTTGTTTAACTTGTTTTCCTT
GGGTTTCTTGTCACAGCAACAGAAAACCAACTACCATACAGGCTCGGAAT
TAAGAACCCACAGTGTCTCTCCATCATTTTCACATCAACCCTTCTGGCCT
CGAATCCTCTCTGCTAGACGAGTTCTGTCAACTTTCCCTGCAAGCCTGTA
GTTGGCCATTCAACAGTGCATCTCCAGTGAGCTCCCAAAGGCATGCCGCC
ATTGCTGGTGGGTTTGGGTTGTTCCCCCCCCCCCCCCCCTTTTTTTTTTN
NTTTTTTTTTTTTTTTTCCCCCCCCTTAAAAAAAAAAAAAAAAACGTGGG
GGGGGGGGGGGTCTCTCCTTTCCTTCCCTTCCTTATATCTTTTCACACTT
CCTTTTATTCTTCTATCCCTACCCAATTAATCTCTATTCTTTCTTCCTGC
TCTATTCTCTCCGCCTTCCTCATATCCCTACCCTTATTGTATTCTGCGGT
CTCTCTTTTAGCTTCCTTTCCATTTTTGCCCTATATTTATATTTCTTCAT
CCCCCTCTATTTTTTTCTCCTGCCTTCTGCTCTCTATAATTATCACCGCG
CCTCTTTTTTTTTATTTGTCCCGCCCATTCTCTTTTTTCTATTTTTTTAT
TTTCACTTTCGCGTCACATTTATCCTTATTTGTATCCACCGCCTTTATCC
CTCTTAT

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCTAAGAAGGATTCATTAGAGTTT
CTTGTTTTTATTTCTGTTCCCCCATTAATGAGGAGGTTATCTTACATATC
AATTCTAAGAGCCAAATAAGCTGAGGAAGGAATTAAAAATATAACCACGT
CTGTAAAGGTAGGGGAGCGTCAAATTAGAAGTTGTACAAACAATTTGGCA
GTTTCTGGGCTTTGTCACATCTAACCCTGGTCCAGCGTTGTGCTGATGAG
TGAGAACTGAGTCTGTGGTGTCCTAGAACTTCAGTGTTCACGGCTTTAGA
AGTCCTGCCTGTGATTTNGGTCCCATTCAGAAGCAAGTNACAGCCATAGG
CAGCTGTGACTCTTGTGTCTCTTGTGTCTCAAAACTACTCAAAACAGATC
TGGGAGGTCATTATTCCTGTCTTCCTGGCCCTGTCTGTAGCTCTGTTTCA
AGCACCTAAGACATGCATCTCCCTTGTTTCATCTGGAAGGATTTGTATGG
AATTTAGATGACATCACCTCTTATGATACTGTTTTCTTCACAGTAATTAA
GCAGAGCTGACCATTATGTGCCTTCAATGAAGATCTCCCTTTACACCAGT
GGTTCTCGACCTGTGGTCAAATGACTCTTTCATATGGTCACATATCACAT
ATCTTACATATCACACATTCACATTACAATTCCTAACAGTAGGGAACTTA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_f23.b1 MSMg01no296_f23.b1 CHROMAT_FILE:
MSMg01no296_f23.b1 PHD_FILE: MSMg01no296_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:33 2005
         (319 letters)



>mm_chr10_21413891_21414609
          Length = 719

 Score =  553 bits (286), Expect = e-162
 Identities = 307/314 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcattgcctagaagcgatggggctgagttaacacatagtaggatctctgaaag 64
           |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 660 gaattcttcattgcctggaagcgatggagctgagttaacacatagtaggatctctgaaag 601

                                                                       
Query: 65  caggagactgaaagatgtttccttgtttaacttgttttccttgggtttcttgtcacagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 caggagactgaaagatgtttccttgtttaacttgttttccttgggtttcttgtcacagca 541

                                                                       
Query: 125 acagaaaaccaactaccatacaggctcggaattaagaacccacagtgtctctccatcatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 acagaaaaccaactaccatacaggctcggaattaagaacccacagtgtctctccatcatt 481

                                                                       
Query: 185 ttcacatcaacccttctggcctcgaatcctctctgctagacgagttctgtcaactttccc 244
           ||||||||||||||||||||||| |||||||||||||||||  ||| |||||||||||||
Sbjct: 480 ttcacatcaacccttctggcctcaaatcctctctgctagactcgttatgtcaactttccc 421

                                                                       
Query: 245 tgcaagcctgtagttggccattcaacagtgcatctccagtgagctcccaaaggcatgccg 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 420 tgcaagcctgtagttggccattcaacagtgcatctccagtgagctcccaaaggcatgctg 361

                         
Query: 305 ccattgctggtggg 318
           ||||||||||||||
Sbjct: 360 ccattgctggtggg 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no296_f23.g1 MSMg01no296_f23.g1 CHROMAT_FILE:
MSMg01no296_f23.g1 PHD_FILE: MSMg01no296_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:33 2005
         (289 letters)



>mm_chr10_21249723_21250411
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctaagaaggattcattagagtttcttgtttttatttctgttcccccattaatgaggag 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 agctaagaaggattcattagagtttcttgtttttattcctgttcccccattaatgaggag 260

                                                                       
Query: 61  gttatcttacatatcaattctaagagccaaataagctgaggaaggaattaaaaatataac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttatcttacatatcaattctaagagccaaataagctgaggaaggaattaaaaatataac 320

                                                                       
Query: 121 cacgtctgtaaaggtaggggagcgtcaaattagaagttgtacaaacaatttggcagtttc 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacgtctgtaaaggtaggggagcgtcaaattagaagttgtacaaacaatttggcagtttc 380

                                                                       
Query: 181 tgggctttgtcacatctaaccctggtccagcgttgtgctgatgagtgagaactgagtctg 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tgggctttgtcacatctaaccctggtccagcgttgtgctaatgagtgagaactgagtctg 440

                                                            
Query: 241 tggtgtcctagaacttcagtgttcacggctttagaagtcctgcctgtga 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtgtcctagaacttcagtgttcacggctttagaagtcctgcctgtga 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |