BAC Information

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BAC

Clone NameMSMg01-296I09
Chromosome10 (Build37)10 (Build37)
Map Location 29,581,141 - 29,581,75329,581,609 - 29,581,802
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064
Downstream geneLOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296I09.T7 (MSMg01no296_i09.b1)MSMg01-296I09.TJ (MSMg01no296_i09.g1)
ACCAG424112AG424113
length738710
length of high quality
(start - end)		613 (126 - 738)194 (76 - 269)
definitionCHROMAT_FILE: MSMg01no296_i09.b1 PHD_FILE: MSMg01no296_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:44 2005CHROMAT_FILE: MSMg01no296_i09.g1 PHD_FILE: MSMg01no296_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:44 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,581,141 - 29,581,753)(29,581,609 - 29,581,802)
sequence
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACATGAAGCATTCACAGTAAGT
TGCAATGGTTCTTGGGCATGAACAAACTATGAATGAAATATAAGCAGGAA
GCTGAGTTAAAACTAAGATGGAAGTGTGGCAAGGTCTGGCCCTCGATGGG
TTAACTACCTGCCTCACTCACTCACCTTTACATCACAGTTACATTGATAA
TGGCATGGAGCAGCTGGGAAGAGGAAGAGGGAATCAAGGACTGTATCTAG
AGAATTCTGAACAACTAAGATAAACAAGACCTCACACAGGCTCATTTTGG
GGACACTTTAAATAGAACCCCAACTGAGGTGCAGATTTCTGTGTATCAGA
CTGCTAAGAGAATGGGATGGTTGTAAGTAGTTAGATGCCTGCATAAGTGA
CCAGTATATAAGAGTCAAGTGATCCTTCAAATTCCAATTACAATACTAAA
TGTGAACATGTTTTTGGGAAAATAGCTGGCATTTGAGCAGTGCTGTGTAT
AAGTCCAGTTCCCACGGTCCTGTAAAGGATATTGTGAGTCAGCACAGGAA
CTCTAGCTAGCAAGTCCTAGAGCAGTGTGGGGTTAGGGCTGGTATTGTTA
TGACATAAAAGTGGATCCAGAAGAAAAGACATTCCACTGAGAAAGGGAAC
AAACAGCTCAGGGTCATAAGCTAGAGACACTATCCCTT

TCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATACATGAAGCATTCACAGTAAGTT
GCAATGGTTCTTGGGCATGAAGAAACTATGAATGAAATATAAGCAGGAAG
CTGAGTTAAAACTAAGATGGAAGTGTGGCAAGGTCTGGCCCTCGATGGGT
TAACTACCTGCCTCACTCACTCACCTTTACATCACAGTTACATTGATAAT
GTCATGGAGCAGCTGGGAAGAGGAAGAGGGAATCAAGGACTGTATCTAGA
AGAATTTCTGAACAACCTTTTGTATTATTTTTAGAACCCTCCCCCCAGGG
GGTCTTTTTTTTTTGGGGAACACCTTTTTTTTTATTTAAAAAAACACACC
CCCCCCCCCCTTTTTGTATGGTGGGGGGGCCGGAATTAACAATTATTTCT
CCCTTCCCTTTTTCCCCCATCATCTTCTATATACACATTAACTTTATCTT
TTCTTTCCCCTCGTTTTCTTTTTATAACTTAATATCTCTTTTTTTTCCCT
TCTTTATTCTCCCCTTCCCCTTCCATCTTTTCTCCTTTCTTTTCTTCTTT
TTCTCCTCATTTTTGTACCCTCTTCCTCTTTTTTTCCCCTTTTATATATC
ACCCTCACTTTAACTTCCTCTACCTCCCCCTATTCTTTTTTTTTCCCCAC
CTTTCATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_i09.b1 MSMg01no296_i09.b1 CHROMAT_FILE:
MSMg01no296_i09.b1 PHD_FILE: MSMg01no296_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:44 2005
         (613 letters)



>mm_chr10_29580941_29581953
          Length = 1013

 Score = 1162 bits (601), Expect = 0.0
 Identities = 610/613 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatgaatgaaatataagcaggaagctgagttaaaactaagatggaagtgtggcaaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 actatgaatgaaatataagcaggaagctgagttaaaactaagatggaagtgtggcaaggt 754

                                                                       
Query: 61  ctggccctcgatgggttaactacctgcctcactcactcacctttacatcacagttacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ctggccctcgatgggttaactacctgcctcactcactcacctttacatcacagttacatt 694

                                                                       
Query: 121 gataatggcatggagcagctgggaagaggaagagggaatcaaggactgtatctagagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gataatggcatggagcagctgggaagaggaagagggaatcaaggactgtatctagagaat 634

                                                                       
Query: 181 tctgaacaactaagataaacaagacctcacacaggctcattttggggacactttaaatag 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tctgaacagctaagataaacaagacctcacacaggctcattttggggacactttaaatag 574

                                                                       
Query: 241 aaccccaactgaggtgcagatttctgtgtatcagactgctaagagaatgggatggttgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 573 aaccccaactgaggtgcagatttctgtgtatcagactgctaagagaatgagatggttgta 514

                                                                       
Query: 301 agtagttagatgcctgcataagtgaccagtatataagagtcaagtgatccttcaaattcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agtagttagatgcctgcataagtgaccagtatataagagtcaagtgatccttcaaattcc 454

                                                                       
Query: 361 aattacaatactaaatgtgaacatgtttttgggaaaatagctggcatttgagcagtgctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aattacaatactaaatgtgaacatgtttttgggaaaatagctggcatttgagcagtgctg 394

                                                                       
Query: 421 tgtataagtccagttcccacggtcctgtaaaggatattgtgagtcagcacaggaactcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgtataagtccagttcccacggtcctgtaaaggatattgtgagtcagcacaggaactcta 334

                                                                       
Query: 481 gctagcaagtcctagagcagtgtggggttagggctggtattgttatgacataaaagtgga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gctagcaagtcctagagcagtgtggggttagggctggtattgttatgacataaaagtgga 274

                                                                       
Query: 541 tccagaagaaaagacattccactgagaaagggaacaaacagctcagggtcataagctaga 600
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tccagaagaaaatacattccactgagaaagggaacaaacagctcagggtcataagctaga 214

                        
Query: 601 gacactatccctt 613
           |||||||||||||
Sbjct: 213 gacactatccctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no296_i09.g1 MSMg01no296_i09.g1 CHROMAT_FILE:
MSMg01no296_i09.g1 PHD_FILE: MSMg01no296_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:44 2005
         (194 letters)



>mm_chr10_29581409_29582002
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacatgaagcattcacagtaagttgcaatggttcttgggcatgaagaaactatgaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atacatgaagcattcacagtaagttgcaatggttcttgggcatgaagaaactatgaatga 335

                                                                       
Query: 61  aatataagcaggaagctgagttaaaactaagatggaagtgtggcaaggtctggccctcga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aatataagcaggaagctgagttaaaactaagatggaagtgtggcaaggtctggccctcga 275

                                                                       
Query: 121 tgggttaactacctgcctcactcactcacctttacatcacagttacattgataatgtcat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 274 tgggttaactacctgcctcactcactcacctttacatcacagttacattgataatggcat 215

                         
Query: 181 ggagcagctgggaa 194
           ||||||||||||||
Sbjct: 214 ggagcagctgggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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