BAC Information

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BAC

Clone NameMSMg01-296J17
Chromosome10 (Build37)
Map Location 64,028,655 - 64,029,354
singlet/doubletsinglet
Overlap geneCtnna3
Upstream geneLrrtm3
Downstream geneLOC665206, LOC216036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296J17.T7 (MSMg01no296_j17.b1)MSMg01-296J17.TJ (MSMg01no296_j17.g1)
ACCAG424171AG424172
length754764
length of high quality
(start - end)
710 (45 - 754)287 (79 - 365)
definitionCHROMAT_FILE: MSMg01no296_j17.b1 PHD_FILE: MSMg01no296_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:50 2005CHROMAT_FILE: MSMg01no296_j17.g1 PHD_FILE: MSMg01no296_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCTCTCCCTGTATTCATATCATATTTACATGAGACATCAATTTTT
AAACTTTACACTTGAACTGACCATTTATTTGAAGTTATGTATTAAAATAC
TTTAATAACCTCTTTGGCTCAACAATAAATGAAACAATGCAAAGAATTTA
AGAAAACAAAACAATAAACTGGTTTTATTCTTGGGTGGTATTGCTTCCTG
GAAGGAAGCCCTAGATGAGTTATGGCAGACAGCAGCACTTATCTGTGGAG
ATTTAATATCACAGACATTATTATTATTATTATTATTATCATTATTATTA
TTATTATCATTATTTACTCATTCCTGCTTCTATTTCATATTTTGAAACAC
ATACATTGATAAATCATGAAATATCTCGGGAAATAAATTCTTTACCTAAT
TTTTTTATACTTAAATTTCTAACTGATATGTTAATTTAAGAAAATATAGA
TTTCTATGCTTCATTCCTATGCCAGTGTTCTGGCTTCTCTATCTGCTCCT
GTTCACATCTAATAACCTTTCTCCTTCATGTTGTTGGAGCTACTCACTCC
CAGAGCCACGAACAACACATTTTCCACATCCTCCAAAGACTTCAGTTTGA
AGACTCTGTTCTCCAAAGACAACATACTATGTTTTAAAATGCATATTACA
GACCCCTTCATGACAAATGGCTCTGGACCACCAGAAGATGTTTTTCTCCT
CTGA
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCTTGTTTTTTATATCCACCACCCACGCCCCAACTG
GTAAGAAGGACACATGCTCCACTATGCTCATAGAAAAAAAAATATATAAT
AGGCGGAGGGTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCAC
TGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATAT
AATTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGAC
ACTATGCCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_j17.b1 MSMg01no296_j17.b1 CHROMAT_FILE:
MSMg01no296_j17.b1 PHD_FILE: MSMg01no296_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:50 2005
         (710 letters)



>mm_chr10_64028451_64029560
          Length = 1110

 Score = 1294 bits (669), Expect = 0.0
 Identities = 694/709 (97%), Gaps = 12/709 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatctctccctgtattcatatcatatttacatgagacatcaatttttaaacttta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatctctccctgtattcatatcatatttacatgagacatcaatttttaaacttta 264

                                                                       
Query: 65  cacttgaactgaccatttatttgaagttatgtattaaaatactttaataacctctttggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacttgaactgaccatttatttgaagttatgtattaaaatactttaataacctctttggc 324

                                                                       
Query: 125 tcaacaataaatgaaacaatgcaaagaatttaagaaaacaaaacaataaactggttttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaacaataaatgaaacaatgcaaagaatttaagaaaacaaaacaataaactggttttat 384

                                                                       
Query: 185 tcttgggtggtattgcttcctggaaggaagccctagatgagttatggcagacagcagcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 tcttgggtggtattgcttcctggaaggaagccctagatgagttatggcagacaacagcac 444

                                                                       
Query: 245 ttatctgtggagatttaatatcacagacattattattattattattattatcattattat 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 445 ttatctgtggagatttaatatcacagacattattattattattattattat--------- 495

                                                                       
Query: 305 tattattatcattatttactcattcctgcttctatttcatattttgaaacacatacattg 364
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 496 tattattatcattatttactcattcctgtttctatttcatattttgaaacacatacattg 555

                                                                       
Query: 365 ataaatcatgaaatatctcgggaaataaattctttacctaatttttttatacttaaattt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ataaatcatgaaatatctcgggaaataaattctttacctaatttttttatacttaaattt 615

                                                                       
Query: 425 ctaactgat---atgttaatttaagaaaatatagatttctatgcttcattcctatgccag 481
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ctaactgatgatatgttaatttaagaaaatatagatttctatgcttcattcctatgccag 675

                                                                       
Query: 482 tgttctggcttctctatctgctcctgttcacatctaataacctttctccttcatgttgtt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tgttctggcttctctatctgctcctgttcacatctaataacctttctccttcatgttgtt 735

                                                                       
Query: 542 ggagctactcactcccagagccacgaacaacacattttccacatcctccaaagacttcag 601
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 736 ggagctactcactcccagagccatgaacaacacattttccacatcctccaaagacttcag 795

                                                                       
Query: 602 tttgaagactctgttctccaaagacaacatactatgttttaaaatgcatattacagaccc 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tttgaagactctgttctccaaagacaacatactatgttttaaaatgcatattacagaccc 855

                                                            
Query: 662 cttcatgacaaatggctctggaccaccagaagatgtttttctcctctga 710
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 cttcatgacaaatggctctggaccaccagaagatgtttttctcctctga 904


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space:   770000
Effective search space used:   770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)