BAC Information

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BAC

Clone NameMSMg01-297I11
Chromosome10 (Build37)
Map Location 21,484,577 - 21,485,202
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936
Downstream geneLOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297I11.T7 (MSMg01no297_i11.b1)MSMg01-297I11.TJ (MSMg01no297_i11.g1)
ACCAG424833AG424834
length753732
length of high quality
(start - end)
250 (72 - 321)597 (77 - 673)
definitionCHROMAT_FILE: MSMg01no297_i11.b1 PHD_FILE: MSMg01no297_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:59 2005CHROMAT_FILE: MSMg01no297_i11.g1 PHD_FILE: MSMg01no297_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGGAACGCGG
AATTCAATATAGGTTCTCCGGATTGTCAGCAAGTATCCTAAACACTGAGC
CACATTACTGGATCAATTTGGATTTTGTTTTGTTTTAGGTTTGTTGGGAC
AAGGTTTCCCTAGGTAGTCCTGGTTTTCCTGAAACTCTATATACCAGGCT
GGTCTCAAACCCACAGAGAACTGCCTGCATCTGCCTTCTGAGTGCTGGGA
TTAAAGGAATATGTTACTGCCACCCAGCAGAGATTGTCAATTTTTGTTTT
TTGAGACAGGATTTCTCTGTGTATTCTTGGTGGTTCAGGAACTTGCTCTT
TTAGACCAGGCTGAGCTTAAACTCAGAGATCTCCTCTTGCTTTTAAATTT
GAATTTTTGATATAAGTTTTTGCCTCCCACCCTAGAGTGGCCTGCAACTT
ACTCTGTATCCCAGGTCTGGCCTCATGCATGCCACAATCTTCCTCTTTCA
GCGTCTTTCATGTTGAGATTATAGACTAAATCCATCCAACTGACCAAATT
TCTTCCTGATAACGAGCCAGTTCGAGTGGCCGTACAGCCCTAAATGATTG
AAGATGTGCAACCTGCCCTTAGAAGTTCTGATCTATAACTAACAAAAACT
TATAAGTTGATAATCCATTTCATATATTACANCGTAACGTGCGTGACACC
TTTATTACCCTCATTTACCAACTATTATGTAAAGTCCTTGACAATAAATG
AAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTTAAATCTTCCCAAATGT
CATACTTTTTCAGATTTGGTAACCAGTAAGCTAGTTTAATGCTTCTCCAA
CTGTGCACACAGCTAGGGACCATGTTAAAATTCAAATCCTGTCTCAGTAG
ATCTCAGGCTGGCCCAAGACCGTGCTTCTTTAACGAGCTCCCAGGAGAGT
CCCATGTTGGCAGTGCCTGACCCACGTTGTGAGTGATAAAGGTCTCAGTT
ACTCCCCAGCTCTGTGTTCGTGGACCACAGATAAGAATCGGACACCTTGG
TGTACAGAGAAGACACTGTGAGCAGCATCGGTGTGCTCTGATGCCCACGC
GTGCTGCTTGTGATAACTGCCCCCTGACCTGCTTTGACCTGGGGAAGAGG
ACGTTCCTGTGGTTCACTCCCCACGGCCGACAGAACATCAGCAGCTCAAG
GACTCATTCTCAACCTCTCTTTACCGTCTCTGTCCCTGTCCTATCTGGCC
AGTGGTGCGCTGGTAGAGGCCCTGTTCCTACTCACTGGCGAATAAGCATC
TCGCTTTGTAACCCTTGCCTTCTGTGGAGTGGATATTCCTGCTGTGACCC
ATTTCCAGCGACTGATGCTATGGTTTGTTTTGTTCTGCTTTGTTTGACTT
TTTGTTCCTTTTTGAAACAGGACCCTGTTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_i11.g1 MSMg01no297_i11.g1 CHROMAT_FILE:
MSMg01no297_i11.g1 PHD_FILE: MSMg01no297_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:00 2005
         (597 letters)



>mm_chr10_21484406_21485402
          Length = 997

 Score = 1025 bits (530), Expect = 0.0
 Identities = 588/626 (93%), Gaps = 29/626 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatttttaaatcttcccaaatgtcatactttttcagatttggtaaccagtaagctagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ctatttttaaatcttcccaaatgtcatactttttcagatttggtaaccagtaagctagtt 231

                                                                       
Query: 61  taatgcttctccaactgtgcacacagctagggaccatgttaaaattcaaatcctgtctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 taatgcttctccaactgtgcacacagctagggaccatgttaaaattcaaatcctgtctca 291

                                                                       
Query: 121 gtagatctcaggctggcccaagaccgtgcttctttaacgagctcccaggagagtcccatg 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 292 gtagatctcaggctggcccaagaccgtgcttctttaacaagctcccaggagagtcccatg 351

                                                                       
Query: 181 ttggcagtgcctgacccacgttgtgagtgataaaggtctcagttactccccagctctgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttggcagtgcctgacccacgttgtgagtgataaaggtctcagttactccccagctctgtg 411

                                                                       
Query: 241 ttcgtggaccacagataagaatcgga-----------------------------cacct 271
           ||||||||||||||||||||||||||                             |||||
Sbjct: 412 ttcgtggaccacagataagaatcggagactgagaagttcgatgagctgtccaggtcacct 471

                                                                       
Query: 272 tggtgtacagagaagacactgtgagcagcatcggtgtgctctgatgcccacgcgtgctgc 331
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tagtgtacagagaagacactgtgagcagcatcggtgtgctctgatgcccacgcgtgctgc 531

                                                                       
Query: 332 ttgtgataactgccccctgacctgctttgacctggggaagaggacgttcctgtggttcac 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttgtgataactgccccctgacctgctttgacctggggaagaggacgttcctgtggttcac 591

                                                                       
Query: 392 tccccacggccgacagaacatcagcagctcaaggactcattctcaacctctctttaccgt 451
           ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 592 tccccacgggcgacagaacatcagcagctcaaggattcattctcaacctctctttaccgt 651

                                                                       
Query: 452 ctctgtccctgtcctatctggccagtggtgcgctggtagaggccctgttcctactcactg 511
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ctctgtccctgtcctatctgtccagtggtgcgctggtagaggccctgttcctactcactg 711

                                                                       
Query: 512 gcgaataagcatctcgctttgtaacccttgccttctgtggagtggatattcctgctgtga 571
           | ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 712 gagaaaaagcatctcgctttgtaatccttgccttctgtggagtggatattcctgctgtga 771

                                     
Query: 572 cccatttccagcgactgatgctatgg 597
           ||||||||||| ||||||||||||||
Sbjct: 772 cccatttccagtgactgatgctatgg 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)