BAC Information

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BAC

Clone NameMSMg01-298L03
Chromosome10 (Build37)
Map Location 125,928,173 - 125,928,317
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668317, LOC100042994, Lrig3, LOC100043547
Downstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298L03.T7 (MSMg01no298_l03.b1)MSMg01-298L03.TJ (MSMg01no298_l03.g1)
ACCAG425678AG425679
length745751
length of high quality
(start - end)
161 (405 - 565)158 (84 - 241)
definitionCHROMAT_FILE: MSMg01no298_l03.b1 PHD_FILE: MSMg01no298_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:26 2005CHROMAT_FILE: MSMg01no298_l03.g1 PHD_FILE: MSMg01no298_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGCTTGTCCTGAGTTCCAGGCGCACCTGGGAAGCGAGTCTGATC
ACTTGACAGAGTTGCCGCACCCACTGTTATCCTTGAAGCCACTGGCTGCT
GACCCATGGAGCGGAGCCTATGTGAATAGTTTACCCTGGTTTCTTTTCTG
TAATTTCCCTCATCCGGGAATGGAAGGTGAGGGAGGAGAATAAAGTGAGC
CACTTATTTGTCATCAAAATTCAAAAACCCTGCTTCTGTCCTAGGCTGGA
GTCCTGGAGAGGAGCGGACATAGCTGCCTTCAGGAGGGGGTCACTCTTCC
CATATAGTGGTGTTTCCTGGTCCCATTAGAAACTTTGGGGCACATACATA
GCAGATGTTCTACTCAGTCTCCATGTGGGTCCTCCAACAACTACAGCGGG
ATGGGGGGTGGGGCTCTCCCTAAAGCTATTGCCTGACTGTGGAATCAGTT
CCCCAACAGGTATGGATACTTTGTCAGGCTTCCCTGGAAGAGGCTGTGCC
TAATCCCGCAGGGAGCTGGGATACCTAGGAGGAGAGGGCCTGCGGTGGAG
AAGAACTCTGTGAATGGGTACTGTGAGGAGGGCAGCCTTTGTTATAGAAA
TAAATAAATAATTAACTAAGCTTCCCCTTAACAATGTGACCTCAATCTCT
GGGTTTCTGGAATGTTTTTAGACTCTTTTCCTCTTAGTCAGGCTA
CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAGCAGACATTTTTTTTTTGG
CATTTGTTTTTATATAACTTATTTCCCTTTGGATTATATAAACTAGATGA
AATGTATAAAATGAGAATTCAATGGGAAAGGACGACAGTTCAGATATAGA
GAGAGAAATGTATATATATATTTCACTAATACACAGCCTTGATATAGCGG
TCATGGTGGTGTGAGTGTGTGTGTGTGTGTGTGCATGTGTGTGTGTGTGT
GTGCGTGTGCGAGCGGGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGC
GTGGGTGCGCACTTGCTCCTTAGATCCTGTGGAACATATCTGAACACTGC
GTCTACTTTGAAATGCTATGTGCATGATAGAGATACCGAGGTGTAAAGAG
GCAACGACTATGTGTCTTGGTTATTAAAGATCTACATTGAAGGGATTTCA
ATTTCTTGCTGGACTTTGCTTTAAAACATTTTACGGGAATATATATTTGG
ACAATCCATTCTCTGGGAAAAAAAAATTGACTGCGCAGTTTAATACCCCA
ATATCAAAACACAACACACGTGTGTGCCCTCCTAGGATCGACGTAAATAT
TCGAGAGGATATCTTCCTTTGATCTCAATGATCTGAGACCATGTTTCTTG
TGTCGATATCTAAGATAAGCGAGTTGCGTGACTGACTCAAGATGTTTTGA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_l03.g1 MSMg01no298_l03.g1 CHROMAT_FILE:
MSMg01no298_l03.g1 PHD_FILE: MSMg01no298_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:26 2005
         (158 letters)



>mm_chr10_125927965_125928518
          Length = 554

 Score =  257 bits (133), Expect = 2e-73
 Identities = 144/149 (96%), Gaps = 4/149 (2%)
 Strand = Plus / Plus

                                                                       
Query: 9   tttttttggcatttgtttttatataacttatttccctttggattatataaactagatgaa 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tttttttggcatttgtttttatataacttatttccctttggattatataaactagatgaa 268

                                                                       
Query: 69  atgtataaaatgagaattcaatgggaaaggacgacagttcagatatagagagagaaatgt 128
           |||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||
Sbjct: 269 atgtataaaatgagaattcaatggaaaaggacgacagttcagata--gagagagaaatgt 326

                                        
Query: 129 atatatatatttcactaatacacagcctt 157
           ||||||||  |||||||||||||||||||
Sbjct: 327 atatatat--ttcactaatacacagcctt 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 554
Length adjustment: 8
Effective length of query: 150
Effective length of database: 546
Effective search space:    81900
Effective search space used:    81900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)