BAC Information

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BAC

Clone NameMSMg01-299K02
Chromosome10 (Build37)
Map Location 94,418,278 - 94,418,524
singlet/doubletsinglet
Overlap genenone
Upstream geneVezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1
Downstream geneCradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119, Eea1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299K02.T7 (MSMg01no299_k02.b1)MSMg01-299K02.TJ (MSMg01no299_k02.g1)
ACCAG426348AG426349
length740799
length of high quality
(start - end)
---250 (71 - 320)
definitionCHROMAT_FILE: MSMg01no299_k02.b1 PHD_FILE: MSMg01no299_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:36 2005CHROMAT_FILE: MSMg01no299_k02.g1 PHD_FILE: MSMg01no299_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCAGAA
GCATCCGGCGNGNNAAANNNTNNNNTTGCCCCCCCTCCCCCCCACGCCCC
GGAACACAACGACCCCACCTGCTCCCTGCGTCATTAATCACAACGCTCAC
CCCCCCCCCTCGTGTTCGTTTATATAACAAGTATCTTGTGCGAATGCCCC
GCACAGCCCCTGCTTTTTTTGGTTTCGCCTNNNNCCCCTAGTACAAAATG
GCAAAAGGGNAAAAAATGGTGTTGAAAAAAAAAAAAGTCAAAAGAACATT
TTTAAAATCAAGCATTATCTATTGNAAAGTGAGACAAAGGAAGACCTGCA
CCCCTTAACCTCTGTTCCATAGGAAAGCTCGATTTAACCCTCTCAGGTTT
AAAGCAAAAAAGGGAACAAAGGGGGGGGGGCAAATAATTTCCCCCAAAAA
AAGGCCTTAAACCAAAAGGTTGGTTCCCCAGGGCCGGGAAAAAAAGTTTT
CCACGGGTTATAAAACCCCCCAATGGGTCTCTTCCCAAAAGAGCCCTAGG
ATTTTTTTTTTCTCCAAAACCACCTGGGGGGGGCCCCCCAAAACACCCCT
GGGGGAAGGGTTTTTTTTTTTATCCCCCCCCCCCCGCGGCGGCGTGTCAA
AAAAAAAAAAAAACAATCTTTGTCTTTCACCCCCCCCCTTTATTTTTTAC
TTCCATCTTTTAAAAAAAAAAAACACCTGGTGCGCCCCCC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGCCTCTAGGGAGAGACACTGCTATCAACC
ATATTAGGATCACAAGCTCATTCGATAAAGGGTAGGGAGGGGTGCAAAAA
AAAAATGTTTCCATTTGTATGTGTGACAGCCTAACTAAAGCCAAAGACAC
AAAATCTCGTTGATCAAAACACATTTACTTGGACTCTTAAGGAACCCAGA
GGTAAGAGCCCACATGCCTTTTGGAAGGCATCCACTTAGCATCAGCATGG
ATGAGGGCCCCAGGAAAGCATATTATACATAAATAGTCTTGTCCCTCAAG
GCAACTCTTCCCTGTATTGTCTTGCCCTGAAACAGACTGAGTAGATGAAA
CAAATCATGTCTGCGCCCCAGAAATTGGTGTGTTGTGTGTTCATCGGTAC
CCCCTCTCTTCTCACTCTCCCTCTCCCCCCTCTCCCCACCCCTCTCCGCA
CGGGTCCACTACCCCGACAGAAGGCCACCGCCCCGGCGCCGCCGATTGCT
GCGGGCCGAGCTGGGGCGACCTACACCCCGCGACCAAAACCTTCCACTCA
CCACCCTTCTCCTCCCGCACCAATCCAACCCCCACCCTCACATAATTCCC
CGCTCCCCCTGTCTCTCACTTCTCTCCCACAACCCTCCCCTCCAACACCT
CCTTCCCCCCTACCACTACCCGCACTCTCCCCACACACACCACCCTACCT
CACACTCACCACCAGCACCCACCCACCCACTCCCCACTCACCACCCGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_k02.g1 MSMg01no299_k02.g1 CHROMAT_FILE:
MSMg01no299_k02.g1 PHD_FILE: MSMg01no299_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:36 2005
         (250 letters)



>mm_chr10_94418078_94418724
          Length = 647

 Score =  464 bits (240), Expect = e-135
 Identities = 247/250 (98%), Gaps = 3/250 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcctctagggagagacactgctatcaaccatattaggatcacaagctcattcgataaag 60
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcctctag--agagacactgctatcaaccatattaggatcacaagctcattcgataaag 258

                                                                       
Query: 61  ggtagggaggggtgcaaaaaaaaaatgtttccatttgtatgtgtgacagcctaactaaag 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 259 ggtagggaggggtgcaaaaaaaaa-tgtttccatttgtatgtgtgacagcctaactaaag 317

                                                                       
Query: 121 ccaaagacacaaaatctcgttgatcaaaacacatttacttggactcttaaggaacccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ccaaagacacaaaatctcgttgatcaaaacacatttacttggactcttaaggaacccaga 377

                                                                       
Query: 181 ggtaagagcccacatgccttttggaaggcatccacttagcatcagcatggatgagggccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggtaagagcccacatgccttttggaaggcatccacttagcatcagcatggatgagggccc 437

                     
Query: 241 caggaaagca 250
           ||||||||||
Sbjct: 438 caggaaagca 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 647
Length adjustment: 9
Effective length of query: 241
Effective length of database: 638
Effective search space:   153758
Effective search space used:   153758
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)