BAC Information

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BAC

Clone NameMSMg01-300N19
Chromosome10 (Build37)
Map Location 87,128,993 - 87,129,330
singlet/doubletsinglet
Overlap genenone
Upstream geneHsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2, 1700113H08Rik, Ascl1, Pah
Downstream geneLOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300N19.T7 (MSMg01no300_n19.b1)MSMg01-300N19.TJ (MSMg01no300_n19.g1)
ACCAG427229AG427230
length741739
length of high quality
(start - end)
672 (70 - 741)340 (383 - 722)
definitionCHROMAT_FILE: MSMg01no300_n19.b1 PHD_FILE: MSMg01no300_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:06 2005CHROMAT_FILE: MSMg01no300_n19.g1 PHD_FILE: MSMg01no300_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGATTGCTACCGAATGGCAGAGAAGCACCTGAAAAAATGC
TCAACATCCTTAATCATCAGGGAACTGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTCATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCTCAAAG
GAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCT
AAGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGA
AAAATGAAGACTGAAGTGTGAACACTATGCCCCTCCTTAGN
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGTCCTTATGCATTCGAGTGAAAA
ACACTTTATCGTTGGGGTTATCTCCCCGTAGGATATAATTCCCCAAGACA
AGAGATAGATCTTCTAACCTTGTCAAAGCGAGGCATGCATGCTCAACTTC
TGATCTGATAAATGAGAGCAGCATCTCCGAGATGCGTTGGATCTCAGAGC
TAGTAAGGGCATGTGGCTGGGAAGTGATTTATTCTGCTCTTTCTATGATG
CTACACCCAGTAGCTTTTCCTTCCTAATGAACGGAATGGCACTATGCTGC
CGTGTGACCCTATTTATCTGAAACACCGCACAGCAGTAATTAACTGCCTG
ATTTGCAAGTAAAATCTTCATAATCCCTTCTCTCCAGCAAACAAGAAATC
TGGCTCTTTTGTCTATGGAAATGGCCTGCTATTTCTTTGCCCCTGAGACA
TTGGGCCATGACCTCAGAAGAACTGTCCCATATCACAACAAGCTGGTACT
TTAGGGCGGCCTCCCATTTCTTCCAGCCAACTTCTACCAAAGCGATTTCC
CAACACATGTTTATAGATGTGCTCTCCTGAGCTCCACACACAGAGAACCG
TTTTCCTTTTGAACAGCTTGTATGGTTACATCTTGAAGTAATTTATCTGT
GTGCTGCCTGCCAACTGCTTCGGAGGCAACACATGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_n19.g1 MSMg01no300_n19.g1 CHROMAT_FILE:
MSMg01no300_n19.g1 PHD_FILE: MSMg01no300_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:06 2005
         (340 letters)



>mm_chr10_87128793_87129532
          Length = 740

 Score =  630 bits (326), Expect = 0.0
 Identities = 335/338 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagtaattaactgcctgatttgcaagtaaaatcttcataatcccttctctccagcaaac 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 gcagtaattaactgcctgatttgcaagtaaaatcttcataaccccttctctccagcaaac 260

                                                                       
Query: 61  aagaaatctggctcttttgtctatggaaatggcctgctatttctttgcccctgagacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaatctggctcttttgtctatggaaatggcctgctatttctttgcccctgagacatt 320

                                                                       
Query: 121 gggccatgacctcagaagaactgtcccatatcacaacaagctggtactttagggcggcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggccatgacctcagaagaactgtcccatatcacaacaagctggtactttagggcggcct 380

                                                                       
Query: 181 cccatttcttccagccaacttctaccaaagcgatttcccaacacatgtttatagatgtgc 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccatttcttccagccaacttataccaaagcgatttcccaacacatgtttatagatgtgc 440

                                                                       
Query: 241 tctcctgagctccacacacagagaaccgttttccttttgaacagcttgtatggttacatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcctgagctccacacacagagaaccgttttccttttgaacagcttgtatggttacatc 500

                                                 
Query: 301 ttgaagtaatttatctgtgtgctgcctgccaactgctt 338
           ||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtagtaatttatctgtgtgctgcctgccaactgctt 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)