BAC Information

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BAC

Clone NameMSMg01-301E14
Chromosome10 (Build37)
Map Location 74,049,472 - 74,049,720
singlet/doubletsinglet
Overlap genePcdh15
Upstream geneLOC623191
Downstream geneEG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301E14.T7 (MSMg01no301_e14.b1)MSMg01-301E14.TJ (MSMg01no301_e14.g1)
ACCAG427530AG427531
length789760
length of high quality
(start - end)
249 (70 - 318)249 (66 - 314)
definitionCHROMAT_FILE: MSMg01no301_e14.b1 PHD_FILE: MSMg01no301_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:39 2005CHROMAT_FILE: MSMg01no301_e14.g1 PHD_FILE: MSMg01no301_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXAATCGNGAGGGTGCGCGGAATTCA
ATGAGCCTACANAAAACACTATTCACAACACCCTCTGGGAAAGCAAGCCA
GGTCCATGACAGCTTGGCTGTGACATTCTGTGGGTCAGTTACCACTAAGG
GCCATGAAGACATCCATGAGCTGAGATGAAGTCTGAAGCCAAATCCATAG
TCCATGCTGCCACCATGGTTGGAGTGTGGAAAGGTGAAGGAAAGAGTATA
TTGTTGCCCATTTCCCAAAGCAAAACGTATCCAATCCAATTTCAAGAATC
CTCACAATCTCCCCTTTTCACTCACTTCACCCCCAAGAGCCATGAGACGC
ACTGGTTTTTGTTTTTCCCCCCACCCCTGCCTGGGTCTGTGATCCTATTG
CAGCCTGTACCCCCCCCCTATGATTGTGTTACATCTCCTTGTTTTTTCTA
TTTGTTTTTTTTTCCGCACTGCTTTCTGTCTCTTGTTTTCTAGCCCGTCC
ATCTTTGTTCCCCCGTGTCATCTCTATTCCTTCGCTCGCTATTTGTCTTC
TTTTTAATCCCTTTCATATTCTACTTATCCTTTTTAGTTCCCTCTCATTA
TCTTCTTTCCAGCTCTTTTCCTTTCTATTTCTTCCCATTCCTTATTCCAT
CGTACGCCTACCTTTTTTTTTTTTTTCTCTTTTCCCCCATTTTGTCCTGC
TTTATTCCCCTTACACTCCTCTAGCATCCCTTTTCCTTTCCCCGCTTTTG
TTAATCTTATCTGCCTTTTCTCCTTGATGCTGTCCGCAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCCAAAATTCTATGTTCTTTCAATGGAGTACAATACAGAGATT
GATGTTATACCTTGGGCTTGACTGGGAACCATGGAGTCCACCTCCCCTGA
CCATGAGCTTGCTGTGTAGATGCTTGGAGTCCCAGACGATATACAACACA
AAAACAAAAATCCTTTCTTTCTCTGGTTCTTCCTTGCCAAGAAGACATGT
TTTTATGGACAAAGATGCCAGGCTTTTGACTCTGTACACTGACCTTGCCT
CTGTGACACTGAGAATTTCTTGTTCAGATCTGCATTGTTCACTTTCAAAT
TTCTTACATTTGTCCCCCCCCCCCCCGCAGGATTTTGTTACCTTCTCTGG
CTTTCCAACACACAGAATGACAAAAAAAAACTTTTCGTCGGCGGTGGGTT
TGTATGTAAATCAATGAAACAAATCCATTGGCTTCGTTTCCACAGAGATC
GTGACTAAGGAATATGCAAGGAAAGGAAGTTACTTTTTGTATCATGGGCC
ATTTATTTGGATTGATTTAAAGCACCATGTATTAGTTAATCAAGCATGGG
GAACATGTAGGTTTGTCATAAGAGAATGTATGAGAAGGAAAATATTCAAT
TAGGATGGATTGTATGTCTTGCTGGGAACAAGAGTGCTGAGACTGTATGG
GTACGTTCGATATCATTGATTAAAGTTGTAAGGATTGAAAAGCCTCTATA
CAATGGGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_e14.g1 MSMg01no301_e14.g1 CHROMAT_FILE:
MSMg01no301_e14.g1 PHD_FILE: MSMg01no301_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:39 2005
         (249 letters)



>mm_chr10_74049272_74049920
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatgttctttcaatggagtacaatacagagattgatgttataccttgggcttgactgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 449 tctatgttctttcaatggagtacaatacagagattgatgttatacctggggattgactgg 390

                                                                       
Query: 61  gaaccatggagtccacctcccctgaccatgagcttgctgtgtagatgcttggagtcccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaaccatggagtccacctcccctgaccatgagcttgctgtgtagatgcttggagtcccag 330

                                                                       
Query: 121 acgatatacaacacaaaaacaaaaatcctttctttctctggttcttccttgccaagaaga 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acgatatacaacacaaaaacgaaaatcctttctttctctggttcttccttgccaagaaga 270

                                                                       
Query: 181 catgtttttatggacaaagatgccaggcttttgactctgtacactgaccttgcctctgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 catgtttttatggacaaagatgccaggcttttgactctgtacactgaccttgcctctgtg 210

                    
Query: 241 acactgaga 249
           |||||||||
Sbjct: 209 acactgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)