BAC Information

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BAC

Clone NameMSMg01-301G06
Chromosome10 (Build37)
Map Location 122,759,586 - 122,760,130
singlet/doubletsinglet
Overlap geneAI851790
Upstream geneAvpr1a, Ppm1h, D630033A02Rik, Mon2, Usp15, LOC100042958
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301G06.T7 (MSMg01no301_g06.b1)MSMg01-301G06.TJ (MSMg01no301_g06.g1)
ACCAG427608AG427609
length694776
length of high quality
(start - end)
68 (56 - 123)545 (65 - 609)
definitionCHROMAT_FILE: MSMg01no301_g06.b1 PHD_FILE: MSMg01no301_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:47 2005CHROMAT_FILE: MSMg01no301_g06.g1 PHD_FILE: MSMg01no301_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCGCCGCTATCGACTCCTATTCGGAGTCCGCGGATTCAAGTCTTTCTG
ACTCGAGTGAGACTGTCTCATTTCCTTACAAAGCAAAAGAGAGAGAGAGA
ATAGATGATAGATTAGAGAGAGCAGCAGCAGCCTCCTCCTCCCCCCCCTT
CTTCTGCGGTTCCTCCTAGTGTCTTCTCCCCCCCCTTTCTTTCGTCCTCT
CCTCTTTTCTCCTCCTCCGGCTGGCCTCCTCTTCTCTCCTCTCCCCTTTT
CTTCTCTCTCCCCTCTCCTCCCCTTCCCTCTCCTTTTCTCTCCCTCCTCT
TTCTTTCTCTCTGTTTCCCCTTCTTTTCTCTCTCCCTTCTCTTTCTCCTC
TTTCTTCTCTTTTTTTTTCTTCTCCCCCTTCTCTCTTTCTTCTTCCTTTT
CTTCCCCCTCCTCCTTCTTCCTCTCCCTCTCCCTCTCCTCTCCCCTTTCC
CTTCTCTTCTTTTCCCCCCTCCTTCCTCCTTTCCTTTTCTCTCCTTTTTC
TTTTTTTTTTCCCTCTCCCCTCTCTCCCCCCCCCCCTCCTCTCCTTTTCT
CCCCTCCTCCTTCTTTTTCCCTTCTTTCCTTCCCTCCTCCTCTTTCTCCC
TCTCCTCCTTTTTCCTTCCTTTTTCCTTTTCTCCCCTCCTTTCCCTCCTC
TCCCCCCTCTTTCTTTTTCTCTCCTTTTCCCTTCTCCTTTCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTATCAGCATAAAGAACTGGGAACTGGACTAGGCT
GGGTGAAAGCTTGTGGCTAAGATGTCTGCTGGAGAAAGTAAAACTATGTA
GCAAAGTAAAGCTATGCAATACATTGTATCTAATGTAAGCAGACACTGAG
GCAGGGTGAGGTGTGAGATGCTGATTAGGAATCTGTCCCCATGAAGGTTA
AGGAGTGAACAGAGTTGGGTAGAGGGAGATGAATTATGATACTGACCAGA
GAAAAATTTGCCACTCTGGCAGTGACCTTCCAGTCAGTATTTATTGTGCA
CTTGAGGTGTCCTGAGGTGATCATACTCTAGTTCCTTATGCCACCACATT
TGATCATCAAATACATAGATGGTGCTAAAAGAGATTGATATCCAATAAGG
AAGTTATCTGTGACGAATAGAATTCTTCAGAGAGTAGATGGCTAACTTCA
CGTAGGGCAGGAGGAAGTCTTTGAATGTCTACCACAGTGTTCATTAATGG
AGAAAGCTATAGCTTCTGTCGCAGGCACTGGCTCACAAAACCACTTACAA
TCTGCAGACATTAGTCTGTGCAGGCGAGGATAAAAATTTAATCCTACAGC
TAAATAATAGGAAACTGTTTAAATATTTACCGTAAAATCTGCCAAGTAAC
CAGGACAAATTTCTTTCTAAAACACATTTTGCCTAGATTACATCTGTTTT
CCCAGGAAATAATATTTATACCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_g06.g1 MSMg01no301_g06.g1 CHROMAT_FILE:
MSMg01no301_g06.g1 PHD_FILE: MSMg01no301_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:47 2005
         (545 letters)



>mm_chr10_122759386_122760330
          Length = 945

 Score = 1015 bits (525), Expect = 0.0
 Identities = 540/545 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatcagcataaagaactgggaactggactaggctgggtgaaagcttgtggctaagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatcagcataaagaactgggaactggactaggctgggtgaaagcttgtggctaagatg 260

                                                                       
Query: 61  tctgctggagaaagtaaaactatgtagcaaagtaaagctatgcaatacattgtatctaat 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tctgctggagaaagtaaaactatgtagcaaagtaaagctatgtaatacattgtatctaat 320

                                                                       
Query: 121 gtaagcagacactgaggcagggtgaggtgtgagatgctgattaggaatctgtccccatga 180
           | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 gcaagcagacactgaggcagggtgaggcgtgagatgctgattaggaatctgtccccatga 380

                                                                       
Query: 181 aggttaaggagtgaacagagttgggtagagggagatgaattatgatactgaccagagaaa 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 aggttaaggagtgaacagagttgggtagagggagatgagttatgatactgaccagagaaa 440

                                                                       
Query: 241 aatttgccactctggcagtgaccttccagtcagtatttattgtgcacttgaggtgtcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttgccactctggcagtgaccttccagtcagtatttattgtgcacttgaggtgtcctg 500

                                                                       
Query: 301 aggtgatcatactctagttccttatgccaccacatttgatcatcaaatacatagatggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtgatcatactctagttccttatgccaccacatttgatcatcaaatacatagatggtg 560

                                                                       
Query: 361 ctaaaagagattgatatccaataaggaagttatctgtgacgaatagaattcttcagagag 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 ctaaaagagattgatatccaataaggaagttatctgtgacggatagaattcttcagagag 620

                                                                       
Query: 421 tagatggctaacttcacgtagggcaggaggaagtctttgaatgtctaccacagtgttcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagatggctaacttcacgtagggcaggaggaagtctttgaatgtctaccacagtgttcat 680

                                                                       
Query: 481 taatggagaaagctatagcttctgtcgcaggcactggctcacaaaaccacttacaatctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taatggagaaagctatagcttctgtcgcaggcactggctcacaaaaccacttacaatctg 740

                
Query: 541 cagac 545
           |||||
Sbjct: 741 cagac 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)