BAC Information

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BAC

Clone NameMSMg01-301M11
Chromosome10 (Build37)
Map Location 93,433,074 - 93,433,308
singlet/doubletsinglet
Overlap geneVezt
Upstream gene4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2
Downstream geneFgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301M11.T7 (MSMg01no301_m11.b1)MSMg01-301M11.TJ (MSMg01no301_m11.g1)
ACCAG427872AG427873
length735778
length of high quality
(start - end)
235 (122 - 356)378 (72 - 449)
definitionCHROMAT_FILE: MSMg01no301_m11.b1 PHD_FILE: MSMg01no301_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:15 2005CHROMAT_FILE: MSMg01no301_m11.g1 PHD_FILE: MSMg01no301_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGATACAGAAAAAGTCAATAGTAATGCTACTGAAGAGGAGACTAGTAAGC
CCTGTGCCGGCGTATACGCCGACAGTAGGACTGAGTATGTGTGTGACAGC
CCAACAGAGGGGCCAAGCAAAGACACCTCTGCAGACACAGGCCTCCTCCT
TCCAGGAGCCGAGGAAACCATGTGCCACCAGCATGAGAGTGAGGCTAAGT
CTCCTCAGGCTGCTGCTGCGGGGGCCACTGCCCCTCCGACTCCCAGGGAC
ACACTGCAACTCTCCATTATGCAGAGGCTGGCTCGACTCCAGCTGCCACC
AGAATTCTATTTCTCTGCCGCCCTCCCTCGCATAAGTGGCCGCCCGGTCC
CTGTCCTTTACCACCATGCAGAAACAAACTTTTGGCGACGAGGAGGAAGA
ACAGCTAGTTGAAGGCGGTGAATATGAGGTGGAGGAAAAATAAAAGCCAA
GATGAAGCGATGGCCTTGATTGTTCTTTTTACAAAAGTGTTCTAGCTGCA
AGACTGGAAAGAGAAATGAGTGTGTGTTTACTCTCTATAAGGCTACGGCG
TGAATTTACAGGGTGAATACTGATTTGAAAACCTGACCTGAAACTATAGA
TACCTGTCTAGTCAGATCCTTTAGGCATAGGAGAGAAAGGTATGGGACTT
TTTTTCAAAATAATTAAACAAACTGCTGTTTTATT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCACCTTCCTCATGGTCTCTGTCTAGAG
ACTACAAACTAGACACGAGCTAGAGACATCCAGGAAGAGGAAACTTCAAC
TGAGAGCATGCATCCATCAGATTGGCCTGTAGGGAAGTCTACAGGCACAT
TGTCTTGATTAAATGATTAATGTGGAAGGGCCCAACCCACTGTAGGCAAT
TCTATCCCTTAACCAGGTGTTTCTGGTTGGTGGTATAAGAAAGGAAGCTG
GGTAAAGTGTGATGGTTTGTGTACACTTGGCCCAGGGAGTGGCACAATTA
GGTGTGGGTGGCCTTGTTGGAGTAGGTATGTCTGTGAGTGTGGGCTCTTT
TCTTTTCTTTTCTTCTCTTTCCTCTTTTCTTTTTTTTTTTTTTTGGTTTT
TGTCTCTTGCTTTTTGTTTTTTTTGCCCCGTTTTGCTTGGCCTGGCTCGT
TTCCCCCTCTTCTTTTTTTCCCCTTCCTTCTCTTCTTTCCCGCTTTCCCC
CCCTCTCTTTTCCTTTTTCTTTTCTCTCCTCTCTTCTTTCCTCTTTCCTT
CTCTTTTTCCTTCCGCTTTTCTTCCCTCCCCCCTATATCTCATCTTCTTC
CTTCCGTTCCTTTGCCTTTTTTCTCCACTTCCTCTCTTTTCTCCCCTCAC
TCCTTTTTTATTTTTTTCCCCTCACTTCCCTTCCTCTTCGTATTCTCTTC
TCCCGTCTTCGTCCTTTACTTTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_m11.b1 MSMg01no301_m11.b1 CHROMAT_FILE:
MSMg01no301_m11.b1 PHD_FILE: MSMg01no301_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:15 2005
         (235 letters)



>mm_chr10_93432874_93433508
          Length = 635

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagtaggactgagtatgtgtgtgacagcccaacagaggggccaagcaaagacacctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 acagtaggactgagtatgtgtgtgacagcccaacagaggggccaagcaaagacacctctg 376

                                                                       
Query: 61  cagacacaggcctcctccttccaggagccgaggaaaccatgtgccaccagcatgagagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cagacacaggcctcctccttccaggagccgaggaaaccatgtgccaccagcatgagagtg 316

                                                                       
Query: 121 aggctaagtctcctcaggctgctgctgcgggggccactgcccctccgactcccagggaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aggctaagtctcctcaggctgctgctgcgggggccactgcccctccgactcccagggaca 256

                                                                  
Query: 181 cactgcaactctccattatgcagaggctggctcgactccagctgccaccagaatt 235
           |||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 255 cactgcaactctccattaagcagaggctggctcgactccagttgccaccagaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)