BAC Information

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BAC

Clone NameMSMg01-302A01
Chromosome10 (Build37)
Map Location 38,292,147 - 38,292,463
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302A01.T7 (MSMg01no302_a01.b1)MSMg01-302A01.TJ (MSMg01no302_a01.g1)
ACCAG428028AG428029
length720720
length of high quality
(start - end)
320 (46 - 365)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no302_a01.b1 PHD_FILE: MSMg01no302_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:32 2005CHROMAT_FILE: MSMg01no302_a01.g1 PHD_FILE: MSMg01no302_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTCTAGAGATGTACTTGTTATCAGGGTCATCCTGGACAAGAAGT
AAGTTTAAGTGATCTAAGTGGCATATAGCTGCTATATAGCTCTGATAATA
TATTAAAATTTATAAATTCACCATGATTGTAGACTTACTGATTTCCACAG
TAAAAAGGAAAATAATTATAGAAAATAAAACAAGTTTTGGGATAAAAATA
AAGTGTTAAAATGATAGCTGATGAGAAAGAGAAAGATTATCTGGTAGGTT
TACTTGAGTGCTAGGGAGACTATAGTTTTGAAGACACAATATATGATATA
TTCACACATATCCAAATTATTATTATGCCCCCCCCTACATCATGGTCACA
GAGGATATCCTTTCCGTGGGAATTACCAGGTGTGCCAGCAGTAGGGTGCT
GACTGAACAGCAGCAGTCATCTAGAATGCTGTCTTCACAGCTCATACTAT
CAAATGCATTTAGTTTAGCTTTGGCTAGTTATTAATATTTAAATATAGTA
TTCGTAAATGATGCTGAGGTTCAAGACTAGTCTAAAAAGGAACACCAATA
GGTTTTAACATCTTAAAACATCTATATTCCAGAGATTAAAGAATGAGCAC
TGATTTACAAGGGGTTTTATTGTTTTGTTTTTTATTTGAAGCTCTTCTAT
CTCCCTCATGCTCATTCTTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTGAGTAAAGCTGCTATGAGA
GAATAATAGCAGCCCAAGAGAAAGAAGTGTGTTGCAGCCAACAAAGCTGA
CAGGAGTTGAATGCATAAAAAGATTCTTGATATCAGATATGAAGATGCAG
AGTTTGGAGTTTGTTCAGCTGATTTTCAGTCTTGCTTTAGTTCAATTATT
TCCTCATGGTCCCACTCTTCCCTTTAAGAATGATGGTATATATCCTGTGC
TATTACATGTTGGAAATATGTGATCAGGTTCTTCATTTTGATTTTACAGG
AGACTACAATTGTGAGATTGTTTGACCCCCCCACCCACATTTTGACAGAC
TCAGAATAATTTGTTACAGACTATGGGGATTTTTGAGGTTGGACTGAATG
TGTTTTGGCATTATCATATAATTATAAGCCTATGGTTGCCAGGAAACTGA
CAGGTGTTAAAAAAAATGTAACTTACAGAGATCTACACATCATTTCACCC
AAACACAAAAGAACATACCTTCTTTTCAGCACCTCACATAACATCATCCA
AAATTGAGCATATACTCAGTTACAAAGAAAGGCTCAACAAATACATAAGT
TGGAATAACACCGTATATCCTTCAAGACCACCACGAGTCAAAGCTGGATT
TTAACAATAGAAAGCCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_a01.b1 MSMg01no302_a01.b1 CHROMAT_FILE:
MSMg01no302_a01.b1 PHD_FILE: MSMg01no302_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:32 2005
         (320 letters)



>mm_chr10_38291824_38292542
          Length = 719

 Score =  561 bits (290), Expect = e-164
 Identities = 311/318 (97%), Gaps = 2/318 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctctagagatgtacttgttatcagggtcatcctggacaagaagtaagtttaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ggaattctctctagagatgtacttgttatcagggtcatcctggacaagaagtaagtttaa 581

                                                                       
Query: 64  gtgatctaagtggcatatagctgctatatagctctg-ataatatattaaaatttataaat 122
           |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 580 gtgatctaagtggcatatagctgctatatagctctgaataatgtattaaaatttataaat 521

                                                                       
Query: 123 tcaccatgattgtagacttactgatttccacagtaaaaaggaaaataattatagaaaata 182
           ||||||||||| |||||||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct: 520 tcaccatgattatagacttactgatttccatagt-aaaaggagaataattatagaaaata 462

                                                                       
Query: 183 aaacaagttttgggataaaaataaagtgttaaaatgatagctgatgagaaagagaaagat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaacaagttttgggataaaaataaagtgttaaaatgatagctgatgagaaagagaaagat 402

                                                                       
Query: 243 tatctggtaggtttacttgagtgctagggagactatagttttgaagacacaatatatgat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 401 tatctggtaggtttacttgagtgctagggagactatagttttgaagacacaatgtatgat 342

                             
Query: 303 atattcacacatatccaa 320
           ||||||||||||||||||
Sbjct: 341 atattcacacatatccaa 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space:   220810
Effective search space used:   220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)