BAC Information

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BAC

Clone NameMSMg01-302A10
Chromosome10 (Build37)
Map Location 17,212,511 - 17,240,297
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302A10.T7 (MSMg01no302_a10.b1)MSMg01-302A10.TJ (MSMg01no302_a10.g1)
ACCAG428042AG428043
length718814
length of high quality
(start - end)		603 (48 - 650)142 (79 - 220)
definitionCHROMAT_FILE: MSMg01no302_a10.b1 PHD_FILE: MSMg01no302_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:34 2005CHROMAT_FILE: MSMg01no302_a10.g1 PHD_FILE: MSMg01no302_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,212,511 - 17,213,109)(17,240,168 - 17,240,297)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGTCCTAATGCTTGAACCTGAGAGGGCACATCCAAATTAAAT
TACTCTATGAAAGTTGGCTATCATGAGACTTGGTTGGACACCTTAGATGC
TCCTGTGTGGTGCAGATGATTAATTTGCTTCGGCTCCCAGATAGCCGTCA
CACTATGCAGAATGGTTACTACAAGTCTTTCAGACTTCACAGCATTTCCT
AAATACATTCCTCAGCTAGTAACTATTAATCCACACCTTCTAAAGGCTAT
GTGTTCGTTCATCTCACTCTTCCCCAGAAGAACTGAGGAAATGGCACTAA
AGACATATCTTAAATGCCATAATTGCTTTAGCTGTGAGCTTATCTCTCTC
GACTGAGTCAAAGCATGCTTAGGATGAGAGAGAAACATCGGAGCCTCCCA
TCAAAGATGAGAGAATGCACTGCTGAAGAGAAGCCTCTGGATCAGGAAGG
TTAAAGCCAGGGAGAGAGCCAACAGGTCCTGAGTCGCAAGGACACCCTGC
CCTACATTCCTGTTTTTTCAGGGAGGGGCTTCGACTGTCCAAAGAGAGCA
TTTGCCATTTCACAGACACTGACGGCTTCTTTCTAAGGCTCGAGAGTGTT
ATTAAAGTCCCTGATACATCAAACTAAACATCTGACAGTTAGATAGTGGC
GGCAGATATCTTTATTAT

CCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCACAGAGCTATATGGTTAAG
GTGTTCTAAGACCATTTTCAGAGGAAAGTGTGCTCATTGGAGAAGGTGAG
TGAGGAGAAGCAGAAGGGGACATGTTGATTCTGGAGAAGTGGGGTCAGTT
GGGGGGGGGGTGAATTGGNAGNCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTNNNTNTNNTTTT
NTTTTTTTTTNNNNNTTTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCN
NTNNNNNNNNTTTTTTNNTTTTTTTTTTTTTTTTTCCCCCCTCTTTAAAA
AAAAAAAATTTCCCCCTGGGGGGGGGGGGGGTTCCTTCCTTTTCCCCTCT
TTTGTCTCTCTCGCCATCCACGGTATCCTATATTTCTCCTCTCTTTCTTC
CTCTCTTTCTTCCCCATTTTGTCCTCTCTCGTTTTTTCTCTTTCCCTCAC
CTTCTTTCTCCTCTTTTGCCCTTTCCGTTCTCCACCTATTCCCTTTTTCG
TCCTCTTCCTCCCTCTTCCTTTTTCCTTCCTCTTCTTCATTTTTTTCCTT
CCTCCCCCCTTTCCTCCCCTTTTTTCCATTCACCACTCTTTTTCTTCCCT
CCTTTCCTTCCCCCGACCTTTGCCCCCCGCTTCTTTTTGCCCGCTCCCTC
CCCTTTCCTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_a10.b1 MSMg01no302_a10.b1 CHROMAT_FILE:
MSMg01no302_a10.b1 PHD_FILE: MSMg01no302_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:34 2005
         (603 letters)



>mm_chr10_17212307_17213309
          Length = 1003

 Score = 1035 bits (535), Expect = 0.0
 Identities = 583/599 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagtcctaatgcttgaacctgagagggcacatccaaattaaattactctatgaa 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcaagtcctaatgcttgaacctgagagggcacatccaaattaaattactctacgaa 264

                                                                       
Query: 65  agttggctatcatgagacttggttggacaccttagatgctcctgtgtggtgcagatgatt 124
           ||| | |||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 265 agtcgtctatcatgagacttggttggacgccttagatgctcctgtgtggtgtagatgatt 324

                                                                       
Query: 125 aatttgcttcggctcccagatagccgtcacactatgcagaatggttactacaagtctttc 184
           |||||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 aatttgcttcagttcccaggtagccatcacactatgcagaatggttactacaagtctttc 384

                                                                       
Query: 185 agacttcacagcatttcctaaatacattcctcagctagtaactattaatccacaccttct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agacttcacagcatttcctaaatacattcctcagctagtaactattaatccacaccttct 444

                                                                       
Query: 245 aaaggctatgtgttcgttcatctcactcttccccagaagaactgaggaaatggcactaaa 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 445 aaaggctatgtgttcgttcatctcactcttccccagaagaactgaggaaatggcaggaaa 504

                                                                       
Query: 305 gacatatcttaaatgccataattgctttagctgtgagcttatctctctcgactgagtcaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacatatcttaaatgccataattgctttagctgtgagcttatctctctcgactgagtcaa 564

                                                                       
Query: 365 agcatgcttaggatgagagagaaacatcggagcctcccatcaaagatgagagaatgcact 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 agcatgcttaggatgagagagaaacatcggagcctcccatcaaagatgagagaatgtact 624

                                                                       
Query: 425 gctgaagagaagcctctggatcaggaaggttaaagccagggagagagccaacaggtcctg 484
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gctgaagagaagcttctggatcaggaaggttaaagccagggagagagccaacaggtcctg 684

                                                                       
Query: 485 agtcgcaaggacaccctgccctacattcctgttttttcagggaggggcttcgactgtcca 544
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agacgcaaggacaccctgccctacattcctgttttttcagggaggggcttcgactgtcca 744

                                                                      
Query: 545 aagagagcatttgccatttcacagacactgacggcttctttctaaggctcgagagtgtt 603
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cagagagcatttgccattttacagacactgacggcttctttctaaggctcgagagtgtt 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no302_a10.g1 MSMg01no302_a10.g1 CHROMAT_FILE:
MSMg01no302_a10.g1 PHD_FILE: MSMg01no302_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:34 2005
         (142 letters)



>mm_chr10_17239968_17240509
          Length = 542

 Score =  252 bits (130), Expect = 1e-71
 Identities = 130/130 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   accacagagctatatggttaaggtgttctaagaccattttcagaggaaagtgtgctcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 accacagagctatatggttaaggtgttctaagaccattttcagaggaaagtgtgctcatt 271

                                                                       
Query: 61  ggagaaggtgagtgaggagaagcagaaggggacatgttgattctggagaagtggggtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ggagaaggtgagtgaggagaagcagaaggggacatgttgattctggagaagtggggtcag 211

                     
Query: 121 ttgggggggg 130
           ||||||||||
Sbjct: 210 ttgggggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space:    71556
Effective search space used:    71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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