BAC Information

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BAC

Clone NameMSMg01-302G23
Chromosome10 (Build37)
Map Location 123,721,215 - 123,721,526
singlet/doubletsinglet
Overlap genenone
Upstream geneAI851790
Downstream gene4930503E24Rik, LOC671416, Slc16a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302G23.T7 (MSMg01no302_g23.b1)MSMg01-302G23.TJ (MSMg01no302_g23.g1)
ACCAG428325AG428326
length748757
length of high quality
(start - end)
321 (36 - 356)158 (67 - 224)
definitionCHROMAT_FILE: MSMg01no302_g23.b1 PHD_FILE: MSMg01no302_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:04 2005CHROMAT_FILE: MSMg01no302_g23.g1 PHD_FILE: MSMg01no302_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAGA
TAAATAAATCTTAGGAATTGGCTAATTGAATCTCTTGTGGTCACCTCAAG
AATTTAAATCCAGACATAGACAGAATCGTGAATTTAAAATGAACAAAATT
AGGATCAAATTGCACTACGTTTTAAGTTAAGGTCTCTATTTTTTAATTTA
TTTGGGTTAGTAGGAAACAATTTTGATCAACTAGAGAATGTTTTTTTTTC
TTAAGATAAATTGCACATGTGAAGTCTTTAACACAGGAATTTTATGTTTT
CACTGCAGCTAAAAAGTATAATTTTTGCTATGGAAGGCCATGTAAAGGCT
TATTATTTAATTTTTAACCCCCCCTCCCATATGATACTCTTATATCACTA
CTGTATGGAAAACCAAAGCACTTCATAACTTCCTAAGGAGAAATATAGAT
ATCCACGCTCATTTTTGCTCTATTCACAGCAGCTAAGAAATGCCATCTGC
CTAGATATCCAACATCTGCCTAGATAACCATGAGAAATCACTGGATAAGA
AAACCATGGAGCATGCATACAATGAAATTTTATTCTGCAATTTTAAAAAG
TGAAATAATGAACTTCATAGAAAAAAATGTGTGAAACTGGAAAATACTAC
ATGATAATATAAGCCAGGCCCAGACTACATGCTGCACGACATCCCTCNAA
TGTGGATTCTAGCTTTGAAAGTTAGTCTTAAGTATTTAATTTGAGTAT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGCTGTAAAATTAAGTCTCCTAANTATTACAGGG
AAGCCACTACACCTATAAAATTTAAACAACATGGGTTCCCAAATAAGTCT
CATAAAATTTTAGTGCTGTATACTGTAGGTGTTGTTCATATAACTATGCT
CGTGCATCTGTCTGTACACATAGTGACACATGCTACTTCTTCACAATCGA
AGGACTATAATTATTAGGGCAATGTCTCCCCACAAGAAAGTAGATTGTTA
ACTCTGTNATTTTGAAGTTAAGTTTTTTTTTTTTAAAAATCAGTAGCAAC
ATATTGTAAGTAGNTTTCCAAAACTGATCCCAGCTTAATTTTCACTTTAA
ATGTGTTAAGCTACCCAAAAAAAAAAGAAAGAAAAGCATGAAGGTTGAGG
GCCTTTGGTAAAGTGAAAAATTTTGGACATGCTCAGCATACAATTTGGGT
AAGGGTGGTTGCATCATTTTGTTTGTGACTGAATAACAGTGTCTGAACAC
CTATGCATACTGCTGCTTATGGGTCCGTGATAATGAATACTGTCTCTGNA
CATGGAAACATAAGACTAAATACCTGAGAACTAATTTGCTCAACTTATCA
AAAAAGAAATTTTTCTTTTCTTAGAAATAATAAAAGCTTTTGAAGTTATA
GATTTTTCTTGAACAAAATTTAGAATTNAACACATGTAAAACCCATCATT
TTNTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_g23.b1 MSMg01no302_g23.b1 CHROMAT_FILE:
MSMg01no302_g23.b1 PHD_FILE: MSMg01no302_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:04 2005
         (321 letters)



>mm_chr10_123721011_123721727
          Length = 717

 Score =  507 bits (262), Expect = e-148
 Identities = 301/316 (95%), Gaps = 4/316 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagagataaataaatcttaggaattggctaattgaatctcttgtggtcacctcaa 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 516 gaattcagagataaataaatcttaggaattggctaattgaatctcttgtggtcatctcaa 457

                                                                       
Query: 65  gaatttaaatccagacatagacagaatcgtgaatttaaaatgaacaaaattaggatcaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaatttaaatccagacatagacagaatcgtgaatttaaaatgaacaaaattaggatcaaa 397

                                                                       
Query: 125 ttgcactacgttttaagttaaggtctctattttttaatttatttgggttagtaggaaaca 184
           |||||| | ||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 396 ttgcacaatgttttaagttaaggtctctgttttttaatttatttgggtcagtaggaaaca 337

                                                                       
Query: 185 attttgatcaactagagaatgtttttttttcttaagataaattgcacatgtgaagtcttt 244
           ||||||||||||||||||||| |||||||    |||||||||||||||||| ||||| ||
Sbjct: 336 attttgatcaactagagaatgattttttt----aagataaattgcacatgtaaagtcctt 281

                                                                       
Query: 245 aacacaggaattttatgttttcactgcagctaaaaagtataatttttgctatggaaggcc 304
           |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 280 aacacaggaactttatgttttcactgcagctaaaaagtaaaatttttgctatggaaggcc 221

                           
Query: 305 atgtaaaggcttatta 320
           ||||||||| ||||||
Sbjct: 220 atgtaaaggtttatta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 717
Length adjustment: 9
Effective length of query: 312
Effective length of database: 708
Effective search space:   220896
Effective search space used:   220896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)