BAC Information

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BAC

Clone NameMSMg01-302O10
Chromosome10 (Build37)
Map Location 103,148,543 - 103,148,732
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302O10.T7 (MSMg01no302_o10.b1)MSMg01-302O10.TJ (MSMg01no302_o10.g1)
ACCAG428654AG428655
length755727
length of high quality
(start - end)
94 (138 - 231)193 (125 - 317)
definitionCHROMAT_FILE: MSMg01no302_o10.b1 PHD_FILE: MSMg01no302_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:39 2005CHROMAT_FILE: MSMg01no302_o10.g1 PHD_FILE: MSMg01no302_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCCCCTCATACTCTGTCTCTCATATAGATAT
AGATATAGATATAGATATAGATATAGATATAGATATAGATATAGATATAG
ATAGAGATAGAGATAGAGATAGAGATAGAGATGGTGTTGTTGGATAGAGA
TGTTTTTTGTGTGTGGGGGGGAGTGTATAGAGTGTGAGAGAGAGTGTGAG
TGGTGTGTGGGGGGGGGTGTTTTTTTGTGATAGATGGATTGATAGATGGT
GGGGAGGTTTTTTTTTTTCCCCCCCCCCCCCCCGTGTGTGTGGGTGTGTG
TGTGTGAGAGACGTGCCCCCCCTATTAAAAAAAAAAATACTGTGGGGGGG
GGGGCACCCCCATCACTTCGTCCCTCTGTGTGCATCTGTAGTTGGGGGCT
GCCTGCGATTCCATCCGCTCAAGGAGATTTTTTAGCAGTGTTCCGCGTAT
TCCCCCTCTTCCCTTGTCTCGGTGCTAGAGCGGGTGGCTATATGTCTGTC
CTTGGAGAGTTTGTTTCTATACAGCGTCAGCGGATTTGGCGTCAGCTATT
TTTGTGCGTGGCAGAGTTGGCCTGTTCTGCGCGCGTTTTATCGCGATGTT
TTTGGGGGCGGTGTTGCCCCTTTTTTTCTTTTTACTAGATTACCGCCCTG
TTTCG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGGCATTACTATCTGTGCATGGCAGC
AGCTTTTTCATGTGGTTTTCCCTGATTTCCTTCACATCTGCAGATGTAAC
AGCTTTGCTGTCTGGGCTACATTAAGTATTTTGAAATTCTACTAACAGCA
CATGAAAAACAGGATAACTCCTCCTGTAAGATGAAGAAGATATTGCATCA
AATATTCTGAGCTGAATCTTTGGGAGGGAATCTGAATCGGCTTGAAACAG
TTGAAAATGGCCCCCAGTTTTTTTTTTTGTGTGGGATTAACTGAAGTCAC
TTCAGTTTGGAATTTGCTCCAAAACAAGGACCCCTCATNNNAATANCNAN
AGNTCTTAANCTACGCTTGTAAAACTGTATCCNTACCAGATGCGGGGGGT
TAATGGCATTTAACAAAATCGTTGTGTGGAAACCCACAGTGGAATGGTGC
CCACAGATCATTATTCAGACTTTCTTGGAATTCTATTTATTTAAAAAGTG
TTGCTAAGTATAGAAAAGACAGTAATCAATATACTACACTCATAGTTCTC
CAACTTATATTGCTCTCCCTGTCTCTCGGTCTCTCTGTGTCTCTGCCTCT
CCTCTCCTCTCTTTTCCTCTCCACTCACTACATAACATTAGACTACGTTA
TTATCTCAAACACCGATGTGTAGTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_o10.g1 MSMg01no302_o10.g1 CHROMAT_FILE:
MSMg01no302_o10.g1 PHD_FILE: MSMg01no302_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:39 2005
         (193 letters)



>mm_chr10_103148343_103148932
          Length = 590

 Score =  350 bits (181), Expect = e-101
 Identities = 189/193 (97%), Gaps = 3/193 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttccttcacatctgcagatgtaacagctttgctgtctgggctacattaagtattttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttccttcacatctgcagatgtaacagctttgctgtctgggctacattaagtattttga 260

                                                                       
Query: 61  aattctactaacagcacatgaaaaacaggataactcctcctgtaagatgaagaagatatt 120
           ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 261 aattctactaacagcacatgaaaaacaggataactcct---gtaagatgaagaagatatt 317

                                                                       
Query: 121 gcatcaaatattctgagctgaatctttgggagggaatctgaatcggcttgaaacagttga 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gcatcaaaaattctgagctgaatctttgggagggaatctgaatcggcttgaaacagttga 377

                        
Query: 181 aaatggcccccag 193
           |||||||||||||
Sbjct: 378 aaatggcccccag 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 590
Length adjustment: 8
Effective length of query: 185
Effective length of database: 582
Effective search space:   107670
Effective search space used:   107670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)