BAC Information

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BAC

Clone NameMSMg01-303D17
Chromosome10 (Build37)
Map Location 62,635,246 - 62,635,911
singlet/doubletsinglet
Overlap geneMypn
Upstream geneTspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7
Downstream gene1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3, Lrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303D17.T7 (MSMg01no303_d17.b1)MSMg01-303D17.TJ (MSMg01no303_d17.g1)
ACCAG428884AG428885
length677736
length of high quality
(start - end)
255 (49 - 303)667 (70 - 736)
definitionCHROMAT_FILE: MSMg01no303_d17.b1 PHD_FILE: MSMg01no303_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:05 2005CHROMAT_FILE: MSMg01no303_d17.g1 PHD_FILE: MSMg01no303_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTACATAGGCAATGCCAGCTTCAAACTTTCAAACCCACCTG
GCTCTGCCTCCCAAGTGCCGGAATGGAAGCCTGTGAACCATGTCTGACTC
AGAAGAGCAATCCAAAAGCACAGAACTTTGCGCGCGCGCGCACACACACA
CACACACACACACACACACACACCCCTACCTTTCTATATGGTATGCATAC
TTACACGCTATCTTACAAAGTAGCAACCGGTCTCTAAGAAGCCTTCTTTA
ATCCCTCCATGAATACATTCCATTTTTTCTTTAACCAAACATTTAAATTT
ACCCCAAAAAAATTCCCCTTTATCCGGGAACAAACAAAAATCTTTTCAAA
AAGGGCCCCCCTTAAAAAAAGGGGGTAAAAAAAATATAAAACCTCCCNTT
ATAAACAAAAAAACCCCCCCAATCCCCCAAAAATAAATAATAAAACACCC
CTCCCTCCGGTAAAAAAAAAAAAAAAAAATTATAATTTTTTTTTCTCGCT
TGCGCGTGAAAAAACTAAAAAAAAACCCCCTTCTTTCCTTCCTTCTCCCC
TTTCAACATACCTACCACTTATTTCCATACNNTTNNNNNCCCCCACCACC
CAGGACCTTCCTTTTTTTTTTCCTGTG
ACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACATATACCAGTCTTGGTTATGTAAACCT
CGCTCCCCAGTTTAAAGTTAATTGGTTAATAAAATGCTAGAGCCTGCGAT
TGGGCAGTAGAGAGAGAAAGGAAGGACTTGAGGATCAAGTGAGGCATCTC
AGGAGACCAGAAGAGGAAGGAGGAAGGAGCACAGGGGGAGGATAAGGTCA
CCATGAGGCCAGGTGGATCATGATGGATCATTCATGGGAATGAATGACTC
AGGTGAGACTCAAACATGTTTGTAACAAGTTGCCTATGGCTGGAAAGTAA
GTTACAATAGCTCACAACCTGCCCAAGCTCGGCTTAAAAGCTTGTAAATA
AAATACCAGGTACTTGCGCCTTTTATACAGGCTAGCTAGAATAATAACTA
ATTTTGACATGAGCCTCGCTAAATGAGACCACTGCTCAAATATCATGTTC
TGGGAGAAGCTTCCCAGACCCTTTTCCCAGGACGGCCTCTTTCTATTCAT
TCTATCACGCTAACCCAGGCATTAGTTACTTTCCGTAGCAATGACCAAGC
AGTGACCTTGGCTAACTACACAAAGGAGGAAGAATTTTCCTTGGCTCAGT
TTCGAGGGGTCTAGTCCTTGCTTGCTTGTCCCAACAGTCTACTTCCTCCA
ACTGGGCCTTCTTCCTAAAGTTTCTAATCTTCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_d17.g1 MSMg01no303_d17.g1 CHROMAT_FILE:
MSMg01no303_d17.g1 PHD_FILE: MSMg01no303_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:05 2005
         (667 letters)



>mm_chr10_62635046_62636111
          Length = 1066

 Score = 1212 bits (627), Expect = 0.0
 Identities = 657/667 (98%), Gaps = 1/667 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacatataccagtcttggttatgtaaacctcgctccccagtttaaagttaattggttaa 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacatataccagccttggttatgtaaacctcgctccccagtttaaagttaattggttaa 260

                                                                       
Query: 61  taaaatgctagagcctgcgattgggcagtagagagagaaaggaaggacttgaggatcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 taaaatgctagagcctgcgattgggcagtagagagagaaaggaaggacttgaggatcgag 320

                                                                       
Query: 121 tgaggcatctcaggagaccagaagaggaaggaggaaggagcacagggggaggataaggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaggcatctcaggagaccagaagaggaaggaggaaggagcacagggggaggataaggtc 380

                                                                       
Query: 181 accatgaggccaggtggatcatgatggatcattcatgggaatgaatgactcaggtgagac 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accatgaggccaggtggatcacgatggatcattcatgggaatgaatgactcaggtgagac 440

                                                                       
Query: 241 tcaaacatgtttgtaacaagttgcctatggctggaaagtaagttacaatagctcacaacc 300
           ||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaaaca-gcaagtaacaagttgcctatggctggaaagtaagttacaatagctcacaacc 499

                                                                       
Query: 301 tgcccaagctcggcttaaaagcttgtaaataaaataccaggtacttgcgccttttataca 360
           |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 tgcccaagcttggcttaaaagcttgtaaataaaataccaggtacttgtgccttttataca 559

                                                                       
Query: 361 ggctagctagaataataactaattttgacatgagcctcgctaaatgagaccactgctcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggctagctagaataataactaattttgacatgagcctcgctaaatgagaccactgctcaa 619

                                                                       
Query: 421 atatcatgttctgggagaagcttcccagacccttttcccaggacggcctctttctattca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atatcatgttctgggagaagcttcccagacccttttcccaggacggcctctttctattca 679

                                                                       
Query: 481 ttctatcacgctaacccaggcattagttactttccgtagcaatgaccaagcagtgacctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttctatcacgctaacccaggcattagttactttccgtagcaatgaccaagcagtgacctt 739

                                                                       
Query: 541 ggctaactacacaaaggaggaagaattttccttggctcagtttcgaggggtctagtcctt 600
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 740 ggctaactacacaaaggaggaagaattttccttggctcagttttgaggggtctagtcctt 799

                                                                       
Query: 601 gcttgcttgtcccaacagtctacttcctccaactgggccttcttcctaaagtttctaatc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gcttgcttgtcccaacagtctacttcctccaactgggccttcttcctaaagtttctaatc 859

                  
Query: 661 ttccaac 667
           |||||||
Sbjct: 860 ttccaac 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1066
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1056
Effective search space:   693792
Effective search space used:   693792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)