BAC Information

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BAC

Clone NameMSMg01-303L21
Chromosome10 (Build37)
Map Location 19,872,184 - 20,044,026
singlet/doubletdoublet
Overlap geneMtap7, EG621697, Bclaf1
Upstream geneEG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5
Downstream gene2610016C23Rik, LOC382344, Pde7b, LOC667202, Ahi1, Myb, LOC100039870, Hbs1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303L21.T7 (MSMg01no303_l21.b1)MSMg01-303L21.TJ (MSMg01no303_l21.g1)
ACCAG429245AG429246
length744743
length of high quality
(start - end)		706 (39 - 744)648 (68 - 715)
definitionCHROMAT_FILE: MSMg01no303_l21.b1 PHD_FILE: MSMg01no303_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:44 2005CHROMAT_FILE: MSMg01no303_l21.g1 PHD_FILE: MSMg01no303_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,043,324 - 20,044,026)(19,872,184 - 19,872,831)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAATTCACA
AAGCACTATCACCTGGACTATATTACCACATAACAGGTAAACATGACTAT
GTTGTTTCTGAAAGGTCACATTCTAAAGCAAAAAGGAAAGTCTCTAACAC
AAAACTGTTTATAATATTGGCTATCTTAGGCCTTTATAAACAAGGCCTTT
TTTCCTTGTTTATAACTGCTAGTTGTGAACTGATCGAAAATGGCTAATAA
AACAAAGAATAGAAACATCAAACCACTTAAATAATTAAAAACTATAATTA
TCAAGCAGGAACAAGTAAAAACAGTTAAATACAAAGCACAATGTTATTTT
TAATTTAGTACTATAATATAAACGCACTACTTTGGATTCTTACCTTTTTA
AAAACTTTCCTGTCTTTGCTGTTTCCTGATCTCCTTCAGGATAAAAGGAG
GACCGCCCCCTAGATTCCTCTCTTGGAGCATTCTGTGGTGTGATTGTCTT
GGCAGGGCTTCTTCGTGATGGGATGTGATGAATCGGACTATTCTGAGAAG
GACTATATCGACTCGACCCATTTCCAACAGAGCCAGATCCAGACCTCTCA
GGACTGTGCTGAATGGAATGTGAATGCTGAGAAGGGGTATTTTTGGCAGA
ATGCACTGTACTAAGCATGGGGGCATCTGAGCATGATGAACTCTGACTGG
GTGGTGTAGCAATAGGTGAAGGACTATGAGGTGACCTTGGACTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTGTGTCACCTAGTATGATCCCAAGCTATGGA
AATCAGCTACACAGAGCAAATCCCATTTGCCAACCTCCTTTAAAAAGACC
ACAGAGCTAAAGTTTCATGCTGCTTTTGATTAATCTGTGATGCCCAAAGT
CTGATGTGCAAGGAATAAATTAATGCCCATATGTTTTGGTGAGACCTGTT
GCCATTCTATTGGAAGATATTACTTACAACCTAGAATGGAGTTTGTTTGT
TGTTGTTGTTTTTAAAAATCAGGATTCTTGGTGGAAAGACTTAGACTCCC
CCCCTCCCCCTTTTTTTTAACATTTATTTATTTTATGTATATGAGTACAC
TGTCACTGTCTTCACACACACCAGAAGAGGCCATCAGATCCTATTACAGA
TGGTTGTGAGCCACCATGTGGGTGCTGGGAATTGGAACTTGGGACCTCTA
GAAGAGCAGTCACTGCTCTTAACCACTGAGCCATCTCTCCAGCCCAGACT
TAGACTTTCTTACTGTGGTCATGTATCTTGTATGAAATTTTCCAGAGTAA
AAAGTGATCTTTATTTAAGCCAGAAGGGCCTCTGTTGTCCCCAAATAAGC
ATAGAAAGTAGACACTCAGGTTGTGCTTATGCTGTGACGTAAGCCCCTCC
CTATTGAAATTCAGATCCTAGAAGCTAGAATCGCTGCTGCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_l21.b1 MSMg01no303_l21.b1 CHROMAT_FILE:
MSMg01no303_l21.b1 PHD_FILE: MSMg01no303_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:44 2005
         (706 letters)



>mm_chr10_20043121_20044226
          Length = 1106

 Score = 1336 bits (691), Expect = 0.0
 Identities = 700/703 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcacaaagcactatcacctggactatattaccacataacaggtaaacatgactatg 63
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gaattcacaaagcactaacagctggactatattaccacataacaggtaaacatgactatg 847

                                                                       
Query: 64  ttgtttctgaaaggtcacattctaaagcaaaaaggaaagtctctaacacaaaactgttta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ttgtttctgaaaggtcacattctaaagcaaaaaggaaagtctctaacacaaaactgttta 787

                                                                       
Query: 124 taatattggctatcttaggcctttataaacaaggccttttttccttgtttataactgcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 taatattggctatcttaggcctttataaacaaggccttttttccttgtttataactgcta 727

                                                                       
Query: 184 gttgtgaactgatcgaaaatggctaataaaacaaagaatagaaacatcaaaccacttaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gttgtgaactgatcgaaaatggctaataaaacaaagaatagaaacatcaaaccacttaaa 667

                                                                       
Query: 244 taattaaaaactataattatcaagcaggaacaagtaaaaacagttaaatacaaagcacaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 taattaaaaactataattatcaagcaggaacaagtaaaaacagttaaatacaaagcacaa 607

                                                                       
Query: 304 tgttatttttaatttagtactataatataaacgcactactttggattcttacctttttaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tgttatttttaatttagtactataatataaacgcactactttggattcttacctttttaa 547

                                                                       
Query: 364 aaactttcctgtctttgctgtttcctgatctccttcaggataaaaggaggaccgccccct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aaactttcctgtctttgctgtttcctgatctccttcaggataaaaggaggaccgccccct 487

                                                                       
Query: 424 agattcctctcttggagcattctgtggtgtgattgtcttggcagggcttcttcgtgatgg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agattcctctcttggagcattctgtggtgtgattgtcttggcagggcttcttcgtgatgg 427

                                                                       
Query: 484 gatgtgatgaatcggactattctgagaaggactatatcgactcgacccatttccaacaga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gatgtgatgaatcggactattctgagaaggactatatcgactcgacccatttccaacaga 367

                                                                       
Query: 544 gccagatccagacctctcaggactgtgctgaatggaatgtgaatgctgagaaggggtatt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gccagatccagacctctcaggactgtgctgaatggaatgtgaatgctgagaaggggtatt 307

                                                                       
Query: 604 tttggcagaatgcactgtactaagcatgggggcatctgagcatgatgaactctgactggg 663
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tttggcagagtgcactgtactaagcatgggggcatctgagcatgatgaactctgactggg 247

                                                      
Query: 664 tggtgtagcaataggtgaaggactatgaggtgaccttggacta 706
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tggtgtagcaataggtgaaggactatgaggtgaccttggacta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space:   762816
Effective search space used:   762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no303_l21.g1 MSMg01no303_l21.g1 CHROMAT_FILE:
MSMg01no303_l21.g1 PHD_FILE: MSMg01no303_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:44 2005
         (648 letters)



>mm_chr10_19871984_19873031
          Length = 1048

 Score = 1214 bits (628), Expect = 0.0
 Identities = 643/648 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtgtcacctagtatgatcccaagctatggaaatcagctacacagagcaaatcccatt 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtgtcacctagtatgattccaagctatggaaatcagctacacagagcaaatcccatt 260

                                                                       
Query: 61  tgccaacctcctttaaaaagaccacagagctaaagtttcatgctgcttttgattaatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccaacctcctttaaaaagaccacagagctaaagtttcatgctgcttttgattaatctg 320

                                                                       
Query: 121 tgatgcccaaagtctgatgtgcaaggaataaattaatgcccatatgttttggtgagacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tgatgcccaaagtctgatgtgcaaggaataaattaatgcccatatgttttggtgagatct 380

                                                                       
Query: 181 gttgccattctattggaagatattacttacaacctagaatggagtttgtttgttgttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgccattctattggaagatattacttacaacctagaatggagtttgtttgttgttgtt 440

                                                                       
Query: 241 gtttttaaaaatcaggattcttggtggaaagacttagactccccccctcccccttttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttttaaaaatcaggattcttggtggaaagacttagactccccccctcccccttttttt 500

                                                                       
Query: 301 taacatttatttattttatgtatatgagtacactgtcactgtcttcacacacaccagaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 501 taacatttatttattttatgtatatgagtacactgtcactgtcttcagatataccagaag 560

                                                                       
Query: 361 aggccatcagatcctattacagatggttgtgagccaccatgtgggtgctgggaattggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggccatcagatcctattacagatggttgtgagccaccatgtgggtgctgggaattggaa 620

                                                                       
Query: 421 cttgggacctctagaagagcagtcactgctcttaaccactgagccatctctccagcccag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttgggacctctagaagagcagtcactgctcttaaccactgagccatctctccagcccag 680

                                                                       
Query: 481 acttagactttcttactgtggtcatgtatcttgtatgaaattttccagagtaaaaagtga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acttagactttcttactgtggtcatgtatcttgtatgaaattttccagagtaaaaagtga 740

                                                                       
Query: 541 tctttatttaagccagaagggcctctgttgtccccaaataagcatagaaagtagacactc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctttatttaagccagaagggcctctgttgtccccaaataagcatagaaagtagacactc 800

                                                           
Query: 601 aggttgtgcttatgctgtgacgtaagcccctccctattgaaattcaga 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aggttgtgcttatgctgtgacgtaagcccctccctattgaaattcaga 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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