BAC Information

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BAC

Clone NameMSMg01-304C05
Chromosome10 (Build37)
Map Location 96,441,846 - 96,442,630
singlet/doubletsinglet
Overlap genenone
Upstream geneEea1, EG432491, LOC667380, Btg1, LOC628256
Downstream gene4930556N09Rik, EG667407, Dcn, Lum, Kera, Epyc, 4921510H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304C05.T7 (MSMg01no304_c05.b1)MSMg01-304C05.TJ (MSMg01no304_c05.g1)
ACCAG429520AG429521
length1,3021,375
length of high quality
(start - end)		773 (87 - 859)785 (88 - 872)
definitionCHROMAT_FILE: MSMg01no304_c05.b1 PHD_FILE: MSMg01no304_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:22 2005CHROMAT_FILE: MSMg01no304_c05.g1 PHD_FILE: MSMg01no304_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCGATTCANNNNNNNCCAATGCGCGCTAXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGGCCCATACCTAAACCCGTTAAAAGCAATCTACAG
CAAACCAGTAGCCAACATCAAAGCATATGGTGAGAAGCTGAAAGCAGCCA
CACTAAAATCAGGGACTAGACAAGGCTGCCCAATTTCTCCCTTCCTATTC
AACATAATACTTGAAGTCCTAGCCAGAGCAATTCGAAAACAAAAGGAAAT
CAAGGGGATACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAG
ATGATATGATAGTATAATAAGTGACCCTAAAAATTCCACCAGAGAACTCC
TAAGCCTGATAAACAGCTTCAATGAAGTAGCTGGATATAAAATTAACTCA
AACAAGTCAATGGCCTTTCTCTACACAAAGGATAATCAGGCTGAGAAAGA
AATTAGGGAAACAACACCCTTCACAATAGTCACAAATAATATAAAATATC
TTTGCGTGACTCTAGCTAAGGAAGTGAAAGGTCTGCATGATCAGAACTTC
AAGTCTCTGAAGTAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCT
CCCATGCTCATTGATTGGCAGGATCAATATAGTAAAAATGGCTATCTTGC
CAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAA
TTCTTCAACGAATTAGAAAGGGCAATTTGCAAATTCATCTGGAATAACAT
AAAACCTAGGATAGCAAAAACTCTTCTTAATGATAAAAGAACCTCTGGTG
GAATCAACATGCCTGACCTAAAAACTGTACTACAGAGCAATTATGATAAA
AAAAAAAAAAAAACTACATGGTTCTGGTATAGCGACAGACCAGTAGACCA
ATGGGATAGAATTGAAGACCCCCAAATGAACCCCCCCCCTATGGACACTT
GATCTTGATAGGGGAGCTAAAACCTCCCCTGCAAAAAAGAAAGCATTTTC
AACAATGGGGGTGGGCCCACTGGGGGTTATCTGTTAAAAAAAGCAAATGA
ACCTTCCTATCTCCTGTTCTTAGGTAAATCTAATGGAACAGGGAATCCCC
TTAAAACCCAAACCTGGAATTTTTTAAGAAAAGGGGGAAAGCCCCAAAAA
TAAAACCCGGGAAAATCCTGAAAAAAACAAGGTTTGGTGTAAAAAAAAAT
TAAAGGGGACTCTAGACCGAATTTTTGGGGAAAACCCTTCAATAAAAAGC
CCTCAAATGGAGAGATTTTTTCTTTTCAAGGGGGTATCCTATAAAAATCA
AG

NNCCCTACTAGTNNNNNAGCATGGATGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTGACTTGGCTTCTCTCCG
TGATAGACTGGAGCTTGTACGCTAAATAAACCCTTTCTTCCCCTATGTTG
TGCATCACTGTTTTACCACAGCAACAGAGAAGCAAATCAAGAGAGCATTT
GTGCTGCTGAGAGCATTGGAGTGGTAGCAGTGGGTGAGGTGTCCTCACAT
CAGTCCAGAGGCAGAAGTAGGGAGTAGACAGGAAAGAACCAAGCCTACAG
ATAAAAGGAGTCATTTCTCAAAGAAGAATAGCTCCGCAGAAAGGTGAGAG
TCCCAAACAGGATTTACTGCCATGAACCCATCTATGCTAACTTGTTAAAG
ATGCTAAGACCCATCTGTGGATGAGTGCTTGGGACAGAGAAATACGTAAA
ACCTTCGTAGGCAAGTTCAAAGTAGTCTTATTTTTAATGTACTATCTGAT
AATAACAGGACCACTATGGAAAAGTTATAGCCTTCCAGAACAGTAGCCAA
CTGTAAGCAGGCATACTGAGAAGAGGCTGCCCAGAGCCTGGTTAGGTTCT
GAGAAGCAGAGACATTGTGCTCATGCAGAAATGACACACCACCAAGAAGT
AATCTGAAGACAAGACTGACATTCAGCTGAGAGTACCTCCTGGGTGGTAT
TATTTATTTTCGAACATCACTGACAGCTCGCTGAAGAACATCATAACTCA
GTTTGCATCTGTGGCCTTTCAAATTGCGCTATGACTGGGAGGTGATTCTT
ATCACATCCATGTTCTCTCACATGAAGGAATATGTTGTTCTCATTTAAAC
TTGAGGACCCAAAGAAAGGAAACCAGATAAACAAAAAAAAAAGTATGCAA
ATGTAGTCATTAAAATGACATAGGGATATTTCCATCCATAAAGTAATATT
TATTAAAATTACTTTACTAGCCCGCAGCCTAACATTATAATCAGATAATC
CACTAGGGAAGTGGAAAAACAAAAGGGGTTTATTTTGCGCCTTGGGGGAA
GATCCCCCACCGGAAATCTTGACTGAGGCCCCGAATTTCCAAAAAAAAAA
AAAAACAGGGGGAACGGAAAGGAAAGAAAAAAACTCGCTTAACCCTCTAG
AAAAAAAAAAAAAAGATTTCTTTAAACAGAAAAAATTTCCCGGGAGGGGG
GGTGGGCCTTATTGCCCCCATGGGAACAAAGGGGGAAGCACCTATTTTTG
GGCCGCCCTCTTTTCTAAAACAACTATAATATTCGAAACCACTTTTTAAG
ACCTGTTTCCTACATATAAAACAATAAATTCTGCACGCAAAAAAAGAGGT
NACCTCTCTCTTCTCACAACTCGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_c05.g1 MSMg01no304_c05.g1 CHROMAT_FILE:
MSMg01no304_c05.g1 PHD_FILE: MSMg01no304_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:22 2005
         (785 letters)



>mm_chr10_96441541_96442725
          Length = 1185

 Score = 1456 bits (753), Expect = 0.0
 Identities = 777/785 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    tggcttctctccgtgatagactggagcttgtacgctaaataaaccctttcttcccctatg 60
            ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1090 tggcttccctccgtgatagactggagcttgtaagctaaataaaccctttcttcccctatg 1031

                                                                        
Query: 61   ttgtgcatcactgttttaccacagcaacagagaagcaaatcaagagagcatttgtgctgc 120
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 ttgtgcatcactgttttaccatagcaacagagaagcaaatcaagagagcatttgtgctgc 971

                                                                        
Query: 121  tgagagcattggagtggtagcagtgggtgaggtgtcctcacatcagtccagaggcagaag 180
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 970  tgagagcattggagtggtagcagtgggtgaggagtcctcacatcagtccagaggcagaag 911

                                                                        
Query: 181  tagggagtagacaggaaagaaccaagcctacagataaaaggagtcatttctcaaagaaga 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  tagggagtagacaggaaagaaccaagcctacagataaaaggagtcatttctcaaagaaga 851

                                                                        
Query: 241  atagctccgcagaaaggtgagagtcccaaacaggatttactgccatgaacccatctatgc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850  atagctccgcagaaaggtgagagtcccaaacaggatttactgccatgaacccatctatgc 791

                                                                        
Query: 301  taacttgttaaagatgctaagacccatctgtggatgagtgcttgggacagagaaatacgt 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790  taacttgttaaagatgctaagacccatctgtggatgagtgcttgggacagagaaatacgt 731

                                                                        
Query: 361  aaaaccttcgtaggcaagttcaaagtagtcttatttttaatgtactatctgataataaca 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730  aaaaccttcgtaggcaagttcaaagtagtcttatttttaatgtactatctgataataaca 671

                                                                        
Query: 421  ggaccactatggaaaagttatagccttccagaacagtagccaactgtaagcaggcatact 480
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 670  ggaccactatggaaaagttatagccttccagagcagtagccaactgtaagcaggcatact 611

                                                                        
Query: 481  gagaagaggctgcccagagcctggttaggttctgagaagcagagacattgtgctcatgca 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  gagaagaggctgcccagagcctggttaggttctgagaagcagagacattgtgctcatgca 551

                                                                        
Query: 541  gaaatgacacaccaccaagaagtaatctgaagacaagactgacattcagctgagagtacc 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550  gaaatgacacaccaccaagaagtaatctgaagacaagactgacattcagctgagagtacc 491

                                                                        
Query: 601  tcctgggtggtattatttattttcgaacatcactgacagctcgctgaagaacatcataac 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490  tcctgggtggtattatttattttcgaacatcactgacagctcgctgaagaacatcataac 431

                                                                        
Query: 661  tcagtttgcatctgtggcctttcaaattgcgctatgactgggaggtgattcttatcacat 720
            |||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 430  tcagtttgcatctgtggcctttcaaattgcactgtgactaggaggtgattcttatcacat 371

                                                                        
Query: 721  ccatgttctctcacatgaaggaatatgttgttctcatttaaacttgaggacccaaagaaa 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370  ccatgttctctcacatgaaggaatatgttgttctcatttaaacttgaggacccaaagaaa 311

                 
Query: 781  ggaaa 785
            |||||
Sbjct: 310  ggaaa 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 785
Length of database: 1185
Length adjustment: 10
Effective length of query: 775
Effective length of database: 1175
Effective search space:   910625
Effective search space used:   910625
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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