BAC Information

Click to search

BAC

Clone NameMSMg01-304F16
Chromosome10 (Build37)
Map Location 20,887,707 - 20,888,033
singlet/doubletsinglet
Overlap genenone
Upstream geneMtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b, LOC667202, Ahi1, Myb
Downstream geneLOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304F16.T7 (MSMg01no304_f16.b1)MSMg01-304F16.TJ (MSMg01no304_f16.g1)
ACCAG429664AG429665
length1,2961,297
length of high quality
(start - end)
138 (511 - 648)327 (144 - 470)
definitionCHROMAT_FILE: MSMg01no304_f16.b1 PHD_FILE: MSMg01no304_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:53 2005CHROMAT_FILE: MSMg01no304_f16.g1 PHD_FILE: MSMg01no304_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCCCGGCCGNNNNNNNNAGCATGCGCGCTATAGACTCANATAGGGAG
AGGACCGCGGAATTCTCACTGAGGAAAAGCCCATAAAAGGCCCCNNNNAA
AGAAANGNNCAANANNANNACCCTTAAAGAGCCCCGCCAAGAAAANAAAC
CTGAGATTCCACCTCACTCCAGTCAGAATAGCCAAGATCAAAAACCCAGG
TGACAGCAGATGCTGGCAAGGATGTAGAGAAAGAGGAACACTCCTCCACT
GCTGGTGGAATTGCAAGCTGGTACAATCACGCTGAAAATCAGTCAGGTCA
TCAGAAAACTATACATAGTACTACCTGAGGACCCAGCTATACGACTCCTG
GGAATATAGACAAAAGATGCTGCAACATATAACAAGGATACATGCTCCAC
TATGTTCATCGCTTTTTTATTTATAATAGCCAGAAGCTAGAAACACCCCA
GATGACCTTCAACCGAGAAATGGATACCGAAGATGTGGTCATTTATACAA
TGGAGTACTGCTCAGCTATTAAAAATGATGAATTCATGAAATTCTTAGGC
AAATGGATGGAACTAGAAAATATCATCCTGAGTGAAGTAGCCTAACCACA
AAAGAACATACATGGTATGCACTCACTGATAACTGGATATTAGCCCAGAA
GTTCGGAATACCCAAGATACAATTCACAGAGCACATGAAGCTCAAGAAGG
AAGACCAAAGTGTGAGTGCTTCAGCCTTTCTTAGAAGGGGTAACAAAATA
TTCGTGGGAACAAAAATGGAGACAAAGGTGGAGCGAGACTTAAGGAAGGC
CATCCAGAAACAGCCCCTCCTGGGGAATCTAATCCATATACAGGGCCCAA
ACCCAGACCCTAAAGTGAATGCCAATAAGTGCATGCTAGACAGGAGGCTG
ATAGAGCTGTCACCGGAAAGGCTCTGCCAGGGCCTGAAAAAAAAGAGGGG
GAGCTCACAGCACCCATTGACCGGAACACGGGGCCCCACGGGGGGAGAAA
AAAAAAAACGGAGGCGCAGAAAGGACTGGCACCCTTAAAAAAAAAAATAT
TAACCAACCAAACCCCGGGAACCCAGGGCGTAACCCACTTAAAAAAACTG
GGGGGGCACCAGGGCCTATCGATAAAGGAAAGAAGAGGTCCGCCGAACAA
CGGGAGAAAAAGCTAACCTGAAAAGCGAGGCCCACAGACTAATAGAAATT
GATACCCGTCGGTTGCTGAGACACGCCAAAAGACAAGGAATAACAAGCCC
CTGAGAAGTGAAAGAACATGCCGAATCTGAGCACACAACACAAATT
NCGGACCTTTNNNNAACGATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTATAAGAGCCCCAGNTGAGNCNNG
AANTTGAGCACTGGACCTTTAAAATCTCTCCCCCATTCCTGGTCCCTTTG
AGACAGTGTCTATGTAGCCCAGGCTGGCTTCAATTACTCTGTGAAGCCAA
AGATGACCTTGGATTTCTAATCTCCCGGCCCCTACCTCCTAAGTGTTCAG
ATGCAGACATGCCTTACCGTGCCTGGTTTATGCTGTTCTGGGGATGCAGC
CACGGCTCTGTGCATGCTGGGAAAGCACTCTACTACCTACGTCACATCCG
CAGCCTTCTTACCTCCTTGGGAGTCTATTTATTTACTCCTCTACTTATTT
TTATATTTGTTCTTTGCCAACATCCTCAGGAGTCATACTATAAGCTGGGT
GGCACCAATTATCCTACATTACTCTTTCTACACACTTAGTTGCTAGAATG
TGAGCATAGAAATGTTTGTTGAGCTGTTGACAGTTGATTGGGAACTAGTT
GGGGCTGCTTATGTATTAGTTTATTTTAACCATACTTCTTTCAAGGATTT
TACTGCATTTTTTAGCTTTTAATGTTTTACCTTTTTTTAACACTTTATTT
TTTATTTCTATTTTATTTCATTTTATTTTATCTCATTTTATTTTATTTCA
CTTTATTTTAATTAAATTTATATTATGCGCGTTACCGCCTCTTCAAAGCT
GCTTCTCAAATGACCAAACACTACTATTTTTTTTTTTTCTCTCACCTCAT
TACGTAACTATAAAAATCAACTCGGCTCTTTTTCTACTCCACTTCCTGTT
TCTCCGTCTTAATTTTTTCTTCTTCTTCTACATGTTATTAATCAACTGAT
TCTTCCTATTACTTACATTCTTTTTTATTCACCTCTTGTACTCCCTTGTT
CTTATCTTTCACTCTTGTCTATTTCTTTCTCTTATCTTGACTATACTTTA
GCTCTTACATTCTCCACTTCTCTATAGCACATCCCTCTAATTCCTCTTTC
TCTCTTATTACTACTCTTAGACTCACATTCGATGTCATTACTTTTAGTTC
TATCATTATCTACTATCCTATATATTCATTAACTTTTTGCTCTCTATTCT
ACCTAATCTTATTTCATTAATCTCCCTCTATATATTATTNAATAATTTTT
TCCCCCCCCCTCATATTAATTATTATTCTTGACCTTTTTTAACTAGTTAT
CCTACCTTCTTCCCTCTATTCCTCACTTACTCTTTTTATCTCTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_f16.g1 MSMg01no304_f16.g1 CHROMAT_FILE:
MSMg01no304_f16.g1 PHD_FILE: MSMg01no304_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:53 2005
         (327 letters)



>mm_chr10_20887507_20888233
          Length = 727

 Score =  586 bits (303), Expect = e-172
 Identities = 321/327 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctttgagacagtgtctatgtagcccaggctggcttcaattactctgtgaagccaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctttgagacagtgtctatgtagcccaggctggcttcaattactctgtgaagccaaaga 260

                                                                       
Query: 61  tgaccttggatttctaatctcccggcccctacctcctaagtgttcagatgcagacatgcc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tgaccttggatttctaatctcccggcccctacctcctaagtgttcagatgcagacaagcc 320

                                                                       
Query: 121 ttaccgtgcctggtttatgctgttctggggatgcagccacggctctgtgcatgctgggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaccgtgcctggtttatgctgttctggggatgcagccacggctctgtgcatgctgggaa 380

                                                                       
Query: 181 agcactctactacctacgtcacatccgcagccttcttacctccttgggagtctatttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcactctactacctacgtcacatccgcagccttcttacctccttgggagtctatttatt 440

                                                                       
Query: 241 tactcctctacttatttttatatttgttctttgccaacatcctcaggagtcatactataa 300
           ||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tactcctctacttatttttataaatgttctttgtcaacatcctcaggagtcatactataa 500

                                      
Query: 301 gctgggtggcaccaattatcctacatt 327
           |||||||||||  ||||||||||||||
Sbjct: 501 gctgggtggcaggaattatcctacatt 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)