Query= MSMg01no304_i19.b1 MSMg01no304_i19.b1 CHROMAT_FILE:
MSMg01no304_i19.b1 PHD_FILE: MSMg01no304_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:20 2005
(715 letters)
>mm_chr10_127294032_127295146
Length = 1115
Score = 1326 bits (686), Expect = 0.0
Identities = 706/715 (98%), Gaps = 5/715 (0%)
Strand = Plus / Minus
Query: 1 ctggcactgccatgctcccacattgataataatcgactgaatctctaaacatataaatgt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 921 ctggcactgccatgctcccacattgataataatggactgaatctctaaacatataaatgt 862
Query: 61 catccccaattaaatgtggtccttataagagttgctttggtcatggtatctgctcagtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 catccccaattaaatgtggtccttataagagttgctttggtcatggtatctgctcagtaa 802
Query: 121 aaccctaagacagaattgttgcattgctaacaccatgaaatacatagcatccagcagcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaccctaagacagaattgttgcattgctaacaccatgaaatacatagcatccagcagcct 742
Query: 181 ccacttcttcacttctacctctccccacctggtgaccagttgcctttcatatctggcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccacttcttcacttctacctctccccacctggtgaccagttgcctttcatatctggcctg 682
Query: 241 tccattctccaaggagaatcacctatacatacaggttccaggttcccatatttactctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccattctccaaggagaatcacctatacatacaggttccaggttcccatatttactctgg 622
Query: 301 tgcagtctaatcctgctacaggacccttgtcaaatctgatggctagcatggtcaacacag 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 tgcagtctaatcctgctacaggacccttggcaaatctgatggctagcatggtcaacacag 562
Query: 361 ctgactagccatgtcaaccactcaggaagggcatagttcctctctgtctcctctcacatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgactagccatgtcaaccactcaggaagggcatagttcctctctgtctcctctcacatt 502
Query: 421 ctcttatttgccagtctttaggtcatgatagaagcacataagttatgctagaatatgttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcttatttgccagtctttaggtcatgatagaagcacataagttatgctagaatatgttt 442
Query: 481 attatggactctaaaagaggcctgatatttctccgtggagctgaaagagatattcacccc 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 attatggactctaaaagaggcctgatatttctctgtggagctgaaagagatattcacccc 382
Query: 541 aattaaaaaacatgctcagcatatagagatcagggttctgtattcctgacaccaaaaaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattaaaaaacatgctcagcatatagagatcagggttctgtattcctgacaccaaaaaaa 322
Query: 601 taaaaaaaataaaaaaatcacatttctaatcctgagtaatatccccccaattcccttcgt 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 -aaaaaaaa----aaaatcacatttctaatcctgagtaatatccccccaattcccttcgt 267
Query: 661 cctctgtaacagaacaaaatgaactcaactcctgtcttgntcatggcctcttata 715
||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 266 cctctgtaacagaacaaaatgaactcaactcctgtcttggtcatggcctcttata 212
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space: 779025
Effective search space used: 779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_i19.g1 MSMg01no304_i19.g1 CHROMAT_FILE:
MSMg01no304_i19.g1 PHD_FILE: MSMg01no304_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:20 2005
(790 letters)
>mm_chr10_127137413_127138602
Length = 1190
Score = 1442 bits (746), Expect = 0.0
Identities = 767/774 (99%), Gaps = 2/774 (0%)
Strand = Plus / Plus
Query: 1 tttattacccaggcttgcctacaactcacaata-cctatgcctcagcctcctgagtgctg 59
||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||
Sbjct: 201 tttattacccaggcttgcctacaactcacaatagcc-atgtctcagcctcctgagtgctg 259
Query: 60 ggattacaggcttgagccacccagcccagcttcctctttgcactcttggtgttaacttaa 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 260 ggattacaggcttgagccacccagcccagcttcctttttgcactcttggtgttaacttaa 319
Query: 120 aaatgtcgagttcatttgcttagaacttgtgggcagcactgccatggcagatcgtcccca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaatgtcgagttcatttgcttagaacttgtgggcagcactgccatggcagatcgtcccca 379
Query: 180 gcgtgagccttgagccagttacaacctgcgctggccactctccatgtctgtgggactgtt 239
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 380 gcgtgagccttgagccagttacaacctgagctggccactctccatgtctgtgggactgtt 439
Query: 240 cctgaaataacagggctaagaaactactagataagttatagcctgtgggtaatgccttag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctgaaataacagggctaagaaactactagataagttatagcctgtgggtaatgccttag 499
Query: 300 tgttatttagataaaatatgtgtcattgatacttaatacatggtaaggaatgttcagaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgttatttagataaaatatgtgtcattgatacttaatacatggtaaggaatgttcagaaa 559
Query: 360 gaacaaagttttcagggatgtctgtttgctgtgagtcttccacatttgtgtaagaaaatc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaacaaagttttcagggatgtctgtttgctgtgagtcttccacatttgtgtaagaaaatc 619
Query: 420 tgatgccatgtagttttttatttctattgtggcttgtaaataatccccactttaataaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgatgccatgtagttttttatttctattgtggcttgtaaataatccccactttaataaag 679
Query: 480 ttttatacaatttatagtagtctttttaaattaaagtattttaatgtgtgtgtgttcatg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttttatacaatttatagtagtctttttaaattaaagtattttaatgtgtgtgtgttcatg 739
Query: 540 gtgtggacaacttgtgtgagtctgctctcatgtggcttccaggggtcagattcaggccat 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 740 gtgtggacaacttgtgtgagtctgctctcatgtggcttccaggggtcagattcaggtcat 799
Query: 600 cgggcttgttcttacccactgagtaacactctgtcctgagtatattttggtttagtattt 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ggggcttgttcttacccactgagtaacactctgtcctgagtatattttggtttagtattt 859
Query: 660 tggagcctgggaagtttgaggatcctgttgcccaggttggccttgaacttattttcctat 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tggagcctgggaagtttgaggatcctgttgcccaggttggccttgaacttattttcctat 919
Query: 720 cccaactctggttctggaatcccaggcatgagtcaccacactcaacatattaaa 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 cccaactctggttctggaatcccaggcatgagtcaccacactcaacatattaaa 973
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 790
Length of database: 1190
Length adjustment: 10
Effective length of query: 780
Effective length of database: 1180
Effective search space: 920400
Effective search space used: 920400
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
