BAC Information

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BAC

Clone NameMSMg01-304K11
Chromosome10 (Build37)
Map Location 106,382,736 - 106,382,906
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667758, EG639162, Ppfia2, Olfr1556-ps1
Downstream gene8430416H19Rik, Lin7a, Myf5, Myf6, Ptprq, EG628870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304K11.T7 (MSMg01no304_k11.b1)MSMg01-304K11.TJ (MSMg01no304_k11.g1)
ACCAG429866AG429867
length1,3141,356
length of high quality
(start - end)
174 (87 - 260)712 (90 - 801)
definitionCHROMAT_FILE: MSMg01no304_k11.b1 PHD_FILE: MSMg01no304_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:35 2005CHROMAT_FILE: MSMg01no304_k11.g1 PHD_FILE: MSMg01no304_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGCCCATNNNNNNNCCATTGGNCCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCAGGTAACACAATGGTAACGTTTAAGGTCAGCTTATCACACA
GAAGACCAGCTAGCTAGCCATAGACCAGGAAGCTAGAGTAAATGAAGGCT
TGGCACTTGGATTTTGTTTTAAAGGTTTAAAGTCAGTACTTTATCCTGGC
AGCCAATCAAGGGAAAAAGTGAAATTTTCAATGTTTATTGGGTGGGGGTG
GGGGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTTTTTTTNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNN
NCCCCNNNNNNTTNNNNNNNNNTNNNNNNNNNNNNNNNNNTTTTTTNTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTT
TNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTNTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTT
TTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTT
TTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTNTT
TTTTTTTTTTTTTTTTTNTTTTNTNNTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTNTTNTTNNTTTTTTTTTTNTTTNTNTTTTTTTTTNTTTTT
TTTTTTTTTTTNTNNTTTTTTNTTTTTTNTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTNNTT
TTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTNNTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTT
TTNTTNNTTTTTTTTNTTTTTTTTTTTTTNTTTTTTTTTTTTTTNTTTTT
TTTTTTTNTTTTTTTTTTTTTTTTTTTTTTNTTTNTTNTTNTNTTTTTTT
TTTTTTTTTTTNNTTTNTTTTTTTTNNTTTTTNTTTTTTTTTTNTTTTTT
TTNTTNNTTTTTTTNNNTNNTTNTTTTTTTTTTTTTTTTTTNTTTTTTTT
TTTNTTTTTTTTTT
NNNCGAAGTAANNNNNNNTTCATGGAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCAACTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAAACAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCAACTCACATCAGCCAGAATGG
CTAAGATCAAATATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACT
CTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGG
AGGATCCCGCAATACCTCTCCTGGGCATATAACCAGAAGATGCCCCAACT
GGTAAGAAGGACACATGCTCCACACATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATGTACACAATGGGGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATA
AGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTT
GCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTAT
GCCCCTCCTTAGAAGTGGGAACAAAACACCCATGGAAGGAGTTACAGAGA
CAAAGTTTGGAGGTGAGACGAAAGGATGGACCATGTAAAGACTGCCATAT
CCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATAC
CCTAACAAGATTTTATCAAAAGGAACCAGATGTAGCTGTCTCTTTGGAAA
ATATGCTGGGGGCTAACAAAACAAAAAAGGAGGTTCCCCCCCCCTAAGGA
GTGATACAAGGCTCCCCCTTAAGAACTATATAAAACCCCAGGACCTAAGG
AATTTCCACCCTTTGGGGAAAAATTATTAATATAAAAACCCCAAACTTTT
TTTTATTCTGGTGTAAAAAAGGCCAACTCCCTCCTCGTAAAAAATACTTA
TTTGATTTTTTATTCTCTCAGGACAACCGACATAATTGATAGTTTTATAG
AGGTTTTTTCATTCACTNATCTTTTATCAACCTTAAATATATAACTCATC
AATATTATCAAATTCTNATTTAAAATACATCCGTCCCAACTCTTTGATAA
TTATTAATTATTACCTTACTATATCATATGCGTTAGTTATANGTATTATN
CTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_k11.b1 MSMg01no304_k11.b1 CHROMAT_FILE:
MSMg01no304_k11.b1 PHD_FILE: MSMg01no304_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:35 2005
         (174 letters)



>mm_chr10_106382536_106383109
          Length = 574

 Score =  323 bits (167), Expect = 4e-93
 Identities = 170/171 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcttatcacacagaagaccagctagctagccatagaccaggaagctagagtaaatgaa 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 cagcttatcacacagaagaccagctagctagcaatagaccaggaagctagagtaaatgaa 260

                                                                       
Query: 61  ggcttggcacttggattttgttttaaaggtttaaagtcagtactttatcctggcagccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcttggcacttggattttgttttaaaggtttaaagtcagtactttatcctggcagccaa 320

                                                              
Query: 121 tcaagggaaaaagtgaaattttcaatgtttattgggtgggggtgggggatg 171
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaagggaaaaagtgaaattttcaatgtttattgggtgggggtgggggatg 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)