BAC Information

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BAC

Clone NameMSMg01-305E13
Chromosome10 (Build37)
Map Location 55,639,157 - 55,639,564
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382460, LOC100041927
Downstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355, LOC100042628
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305E13.T7 (MSMg01no305_e13.b1)MSMg01-305E13.TJ (MSMg01no305_e13.g1)
ACCAG430306AG430307
length1,2941,235
length of high quality
(start - end)
423 (31 - 453)---
definitionCHROMAT_FILE: MSMg01no305_e13.b1 PHD_FILE: MSMg01no305_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:01 2005CHROMAT_FILE: MSMg01no305_e13.g1 PHD_FILE: MSMg01no305_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCAGACAGTGGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATT
CACTTCTCTGCAAAATTAATTAGTAGAGATTTTATTCTGGCCCATGATAC
AGGGGCACATACAAAAAGTTAGGGCTCCCAGTGTTGGTCAAACATCATCT
AATAAAACAAGAAAATTAATTAACTAAAATTTATTAGCCCCACATTTATT
TAAAACATCTCTTAAAATAAGAAGAAAATTTATTTCATGATGCTGAGCCT
TGTGAGGGGGGAGAGATGGAGCAGTGGAAGATGAGCTTACGCTAATGGAC
ACAATGAATATTCTTTAACCTAAAATAATATATAGAACCTTAGAAAATGA
TATCGAATAAAATGTAAGCTCCATCACTCACATCCGCAGGGCTTATGAAT
TATAACAGATGTTTCTGGAGCATTAATGTACTCTTCAAATCTACCATTCA
GTTTTTTTTTCCCCCCCCCGCAGATGGGAGCTCACGCCCAAAAAAGAGAG
AAGTCATAATTCTAAGTTTAACTTCACAAATACATACTTAACATGCTTTG
CCATAATATGAAGTCAAGCGATTTTAATGTGAGTTTGTTGAAAGCAATAA
GTAATACTAAATAAAAATTGAAGGTATACATGTATAAGAGGGAGTTACTC
AGTATTCAGAAAAGCTCTGAGTTCATCATAAGCTTAACGAACTTTGCAAC
TTTACACTGCCTGAGTTTATTACTGCAGCACTTGAAATCTTCACAATTCG
GTTTTCATTCCTCCAGACCCCTTAAGGGCTGTCAGGTGCATCCTTGGAAA
CACTACTGCTTTTGTCTTCACAGCTCACATACTTTTGGCACTTCCCCATT
GCTTGTCAAAATAATTAATATCTGGAGCTGAAAAAAAAAGGGATGCTGCA
TTTTAAAATCAATCCTTGAGAGAAACAGGGTAAAGGAATACTCCATTAAA
TAAGCTTTCTGGCTCTGACCTTGGTTGGATTGCAAAACCTGTCCTGGCAT
CTAAAAACTAAGGACCCGGTTTTCTCATGGCGCTAAGGGCCGGTTTCTTT
TCAATAATAACTGCCAAATTTGCCCAATTTGGTTTGTAGAAAAAACAACC
CCCCCAACAAAGGGAATAAAATTAAAAAGCTTTTTGTTAAATATCTAAAT
AAAAAAAGTGACGTGATACCTTTTTAATTAAAATTTATTGGGTTATTATA
ATNTTCTACCACAACATATATCTGTTAATTCTAATATATAAATATAGATT
TTGTACATTTGTAATAATACTTTTTTTATTCTCCAACACAATTC
NNNNAATTTTTNNNNCGCTTTTTTTTTCTGTGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTAAGCCCCCCGGTTTATA
NAAAGNCTGAATTTATATCTTAAAAAAGCCCCCAAGAAGCCCCGGGAAAA
AANNGNGNANANANNCNNANACCANNGGNANCACAAGGCCCACCCCCCCG
GGGAAAACGGANNANNGCCCNCNCCGNGCNCNACCGGACGGCNCCNNNNC
NCCNCNCCGNNGGNNACNAAGNGNGGNGNGCNGNGACCCGCACGCGCAAA
GGGGGGNGGAGGCNCAGNANCAAGNACCNAACAGGNNANNACAGGCNCAA
GAAGAAAANACCCNNGAGAACCCCGAGAACCACAGGNNAGAANAAACAAA
CANACCACTTTTTTACACAACAGCAGCAACAACAGACAGGGNAGGGGGAG
AAAGAAAGANNTTTTTTTTCTCCCCCCCCCCCANNNGNNCCCCCCCCCCA
AAAAAAAAGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCCNNNCNNNCCNNNNNNNCCCCNCCCCCCC
CNCNNCCCCCCCNCNNCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCC
CCCNNCCCCCCNCCCCCCCNCCCCCNCCCCCCCCCCCCCCCNCCNCCNCC
CCCCCNCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCNC
CNCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCNCCCCCCCCNCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCNCCCCCCCCCCNCCCCCCCCCCCCCCCCCCNCCCC
CCCCCCCCCCCNCCCNCCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCC
CCCCCCCCCCCCCCCCCCCCCCCCCNNCCCCNCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCNCCCCCCCCNCCCCCCCCCCCCCCNCCCCC
CCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCNCCCCCCNCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_e13.b1 MSMg01no305_e13.b1 CHROMAT_FILE:
MSMg01no305_e13.b1 PHD_FILE: MSMg01no305_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:01 2005
         (423 letters)



>mm_chr10_55638942_55639765
          Length = 824

 Score =  719 bits (372), Expect = 0.0
 Identities = 399/408 (97%), Gaps = 1/408 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattcacttctctgc-aaaattaattagtagagattttattctggcccatgatacaggg 74
           |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 216 gaattcacttctctgcaaaaattaattagtagtgattttattctggcccatgatacaggg 275

                                                                       
Query: 75  gcacatacaaaaagttagggctcccagtgttggtcaaacatcatctaataaaacaagaaa 134
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 276 gcacatacaaaaagttagggctcccagtgttggtcaaacaacatctaataaaacaagaaa 335

                                                                       
Query: 135 attaattaactaaaatttattagccccacatttatttaaaacatctcttaaaataagaag 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 attaattaactaaaatttattagccccacatttatttaaaacatctcttaaaataagaag 395

                                                                       
Query: 195 aaaatttatttcatgatgctgagccttgtgaggggggagagatggagcagtggaagatga 254
           |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 396 aaaatttagttcatgatgctgaaccttgtgaggggggagagatggagcagtggaagatga 455

                                                                       
Query: 255 gcttacgctaatggacacaatgaatattctttaacctaaaataatatatagaaccttaga 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gcttacgctaatggacacaatgaatattctttaacctaaaataatatatagaaccttaga 515

                                                                       
Query: 315 aaatgatatcgaataaaatgtaagctccatcactcacatccgcagggcttatgaattata 374
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |
Sbjct: 516 aaatgatatcgaataaaatgtaagctccatcactcacatccgcagggcttatgaaagaaa 575

                                                           
Query: 375 acagatgtttctggagcattaatgtactcttcaaatctaccattcagt 422
           |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 576 acagatgtttctggagcattaacgtactcttcaaatctaccattcagt 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 824
Length adjustment: 9
Effective length of query: 414
Effective length of database: 815
Effective search space:   337410
Effective search space used:   337410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)