BAC Information

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BAC

Clone NameMSMg01-306K02
Chromosome10 (Build37)
Map Location 36,510,959 - 36,511,249
singlet/doubletsinglet
Overlap geneHs3st5
Upstream geneLOC667860
Downstream geneHdac2, Marcks, LOC100040846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306K02.T7 (MSMg01no306_k02.b1)MSMg01-306K02.TJ (MSMg01no306_k02.g1)
ACCAG431234AG431235
length768770
length of high quality
(start - end)
234 (136 - 369)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no306_k02.b1 PHD_FILE: MSMg01no306_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:29 2005CHROMAT_FILE: MSMg01no306_k02.g1 PHD_FILE: MSMg01no306_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATATGTGTATGACATATGATTGTATCTACCCCTCAACTCTTAAT
AGCTCCCCCTAGACAGCCCCTCTTAATCCCTTGATGTAATGATTTTATAA
ACCACTAAGACCCATTTCTTAGGAATTTATTTATATGAAGAGGCATCATG
ACCAAGTCAACTATTATCTTTTTTTTTTTTTTTCACTTGGGCTGGCTACA
GTTTCTGAGGTTTAGTTCATTATCATGATGGTGCAAAGCATGGCAGCTTC
TAGGCAGACATGGTACTCTAGAAGGTGCTGAGTGTTCTACATCCTGATCC
AAAGGTAGCCACAGAAGGATATTGTCTTCCCACCTGCACCCAGGAGAGAC
TCTCTTCCACACTGGGTGGAACTTGGGCATAGGACCTCAAAGATCACCTC
CTCAGTGACACACTTTCTCCAATAAAGCCACACCTCCTAAAAGCGCCACT
TCCCATGCGCCAACCATATTCAAACCACCACATTCCACTTCTTGCCATCC
ATAGGCTTGTTCAAACACATGAATCTAGGGGAGCCATACCTAGCTATAAT
GTAACATAAACTACACTAATTCAACTTCAAAAGTCCCCATAGTCCATCAC
AATCTCAACAATGTTTAAAAGCCCAATGTTCAGTCGTTTCTGAGATGCAT
CCAATCTCTTAATTGTAATCCCCTATAGAATTAAATTCCAAAAGCAGATT
GTGTACTTCCAACATCAA
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACTTTTCAGAGCACAAAGGACA
CTCTATAGTTCTATGCACAGTTTTTTAATATGTGTTTATGCAACAAGATC
TTAGGATAGTAGCAAAAAAACAGTGAATTATTCTTAAAATTTGAAAATCT
GTGGAAACAAAAATAAATCATAATATAGAAAGGAAAATAAACAACTAATA
GTTCATTCCTTAGTAATGAGGAATATCATAAATGCAGTTAAATGTTGTAG
GGGGAAAGGTTTAAAACACACCCTTCTTTTGAGTTGCTTAAGAACAGATG
AGAAATATTCTTAACAGCATGTTTCCTTCTTCCCCCCCCCCCCTTAAAAA
CGTACTCCATATGGTTATTAACTAACTCAATTCTCAAAAGAATATGCATT
TATATGTCTCAATATGCAGATATATCAATATTTTATATCAGTAAAGGGTG
TTTCGAATAAAGACCTGCTGATGGGCCTGAATTGTTCTAGTGGAAAATTT
TTAATTGTTTTACTTTGCATTACTCAAGAAGAAAGGTAATCAGAAGCTAG
ATGAGGTTTTTTTTGTTTTGTGTTGTTTTGTTTTGTTGTGTTTTGTTTTT
GTGTTTGTTTTTATTGTGCCCAAGAGACTGGTGGCAATACAGCACAGTGT
ACCATTCTCTGTCAGGGGTATATTTACATTGCGTTGCTAAGTTATGTAGC
ACAAAACATTCTTAACTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_k02.g1 MSMg01no306_k02.g1 CHROMAT_FILE:
MSMg01no306_k02.g1 PHD_FILE: MSMg01no306_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:29 2005
         (293 letters)



>mm_chr10_36510759_36511449
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 289/293 (98%), Gaps = 2/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacttttcagagcacaaaggacactctatagttctatgcacagttttttaatatgtgtt 60
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 201 acacttttcagagcacaaaggacact--atagttctatgcacagttttttaatatgtgtt 258

                                                                       
Query: 61  tatgcaacaagatcttaggatagtagcaaaaaaacagtgaattattcttaaaatttgaaa 120
           ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 259 tatgccacaagatcttaggatagtagcaaataaacagtgaattattcttaaaatttgaaa 318

                                                                       
Query: 121 atctgtggaaacaaaaataaatcataatatagaaaggaaaataaacaactaatagttcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atctgtggaaacaaaaataaatcataatatagaaaggaaaataaacaactaatagttcat 378

                                                                       
Query: 181 tccttagtaatgaggaatatcataaatgcagttaaatgttgtagggggaaaggtttaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tccttagtaatgaggaatatcataaatgcagttaaatgttgtagggggaaaggtttaaaa 438

                                                                
Query: 241 cacacccttcttttgagttgcttaagaacagatgagaaatattcttaacagca 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cacacccttcttttgagttgcttaagaacagatgagaaatattcttaacagca 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 691
Length adjustment: 9
Effective length of query: 284
Effective length of database: 682
Effective search space:   193688
Effective search space used:   193688
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)