BAC Information

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BAC

Clone NameMSMg01-307C08
Chromosome10 (Build37)
Map Location 102,418,155 - 102,418,344
singlet/doubletsinglet
Overlap genenone
Upstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413
Downstream geneCart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307C08.T7 (MSMg01no307_c08.b1)MSMg01-307C08.TJ (MSMg01no307_c08.g1)
ACCAG431600AG431601
length728705
length of high quality
(start - end)
---192 (106 - 297)
definitionCHROMAT_FILE: MSMg01no307_c08.b1 PHD_FILE: MSMg01no307_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:07 2005CHROMAT_FILE: MSMg01no307_c08.g1 PHD_FILE: MSMg01no307_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GATTTCAAACTTACTCATAGTGATGCATTGTCCAAAGTTATGACCGCGAT
GATAAATTCTCACAAGTCAACCGACGAAATTCGAAGCTTGAATGATTCCT
GAACGTACGTGAAACGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXN
TGGCGGCCGCCTGTTTCGGACCTGGGGGNGAACTANANATTTTTCCACAG
CAATACCATTTAGCATCTAGNTGCCTTTAGCACACATGAGACCTGTTTTC
TCAACATGCGATATTGTTTCAAAGTTTCTATGTTCACATTCCTACCTTTT
CCATGGCTTTTGAAATCTCAATTCCTCATACACTTATGGGGTTAGACCAT
CTCAACATTAAGTATTTAAGAAATAATTTTTAATTTCACTAACCAGGGAT
GTTCAACAGATATTCTGCCTCTTTCCTTCACTTCAGCAACTCTCATTTGA
TAATTTGTACATAAAGAATTGCAGATATTTAACATAATTTTTTACAGACC
GCTCATATATTCAGGGGCATAATACATTTCTCTAATAAGTTGCACACCCG
TCAACATTGAAGGAAACTGTATAAATTAGATACTAGGTTTATAGTAGGGA
AAGACTCATCAGGTAGAGAATTAGGAATGAGTTATACTTTCATGTTTGAA
ATTTGTCATCTTGTCTGGATACAAAATGCAACATAGACCCAATGACTATG
ACTAATATAGACAACTGTGATGTTGATCACCACTGCTCCAGTGCAATCTA
GCTATGTGAGGGACTAGATGAGGCAGTTTATCTTATATTGATATTTAGTG
ATATTTTTTGAAAGAAATAAAAACAATGTTTTCTATAAAAATGTCAATCA
AGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_c08.g1 MSMg01no307_c08.g1 CHROMAT_FILE:
MSMg01no307_c08.g1 PHD_FILE: MSMg01no307_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:07 2005
         (192 letters)



>mm_chr10_102417955_102418546
          Length = 592

 Score =  329 bits (170), Expect = 8e-95
 Identities = 185/190 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcgatattgtttcaaagtttctatgttcacattcctaccttttccatggcttttgaaa 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 atgcgatattgtttcaaagtttctatgttcacgttcctaccttttccatggcttttgaaa 260

                                                                       
Query: 61  tctcaattcctcatacacttatggggttagaccatctcaacattaagtatttaagaaata 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcaattccccatacacttatggggttagaccatctcaacattaagtatttaagaaata 320

                                                                       
Query: 121 atttttaatttcactaaccagggatgttcaacagatattctgcctctttccttcacttca 180
           ||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttgaagttcactaacctgggatgttcaacagatattctgcctctttccttcacttca 380

                     
Query: 181 gcaactctca 190
           ||||||||||
Sbjct: 381 gcaactctca 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)