BAC Information

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BAC

Clone NameMSMg01-307E07
Chromosome10 (Build37)
Map Location 98,216,172 - 98,216,459
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667438, EG432494
Downstream geneAtp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307E07.T7 (MSMg01no307_e07.b1)MSMg01-307E07.TJ (MSMg01no307_e07.g1)
ACCAG431686AG431687
length728735
length of high quality
(start - end)
370 (44 - 413)291 (73 - 363)
definitionCHROMAT_FILE: MSMg01no307_e07.b1 PHD_FILE: MSMg01no307_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:16 2005CHROMAT_FILE: MSMg01no307_e07.g1 PHD_FILE: MSMg01no307_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAA
TTCAGAAAGTTATCCTCCCAAAAAACAAACAATCCAATTTAAAAATGGGG
CATGGAACTAAACAGAGAGTTCTCAACAGAAGAATCTCAAATGACCAAGA
AGCACTTAAAGAAATGTTCAACATCCATAGCCATCAGGGAAATGCAAATC
AAAATGACCCTTAGATTCCATCTCACACCAATCAGAGTGGCTAAGATCAA
AAACTCAAGTGACAGCAGATCCTGGTGAGGATGTGGAGAAGGAGGAACAC
TACTCCACTGCTGGTGGGATTGTTTAGCTGGTACAACTACTCTGGAAATC
AATCTGGCAGTTTCTCATAAAATTGGAAATAGTTATACCTGAAGACCCAG
CTATACCACTCCTACCCCCCCCCCAAATGAGGACCCACGACATCACAAGG
ACATGTGCTCTACTATGTTCATAGCAGCTTTCTTCATAATAGCAAGAAAC
GGGAAGCAACCCAAACGTCCCTCAGCTGAAAAATGCATAGAGAAAATGTG
GCTCATTTATACCATGGAATACTATTCAGCTATTATAAAGGACATCATGA
ATTTTGCAGGCAAATGGATGGAACCAGAAAATATTCCTGAGTGAGGTTAC
CCAGACCCAAAGGAACATGTATAGTATGTACTCACTGATAAGTGAATATT
AGTTAAAAAGCACAGATTACCTACTATA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGTTCTGACTCAGCGTCTTGTAACTGA
GGCCAGAAATACATGTTTTTGTGATATGGAGGCTCTTAACATAGGCCATA
TGACAAGGAAACTATCCACTTCTGAAAAATGGCGCTTATGCAATTAATAC
ATTGGATTGAACAAAGCAGAAGCACATGTGTCCTTTGCTTAGGGAGAAGA
TGGCTGTGCCATGGGAGCATAGAGGGGTGCTAAGATTCACCCCAGAAGCT
AGAGATTGCTAGTGTAGAGCTGATGCATGGGACTTAAGTAAGATTCCCCA
GCTACATTGCTTATGGAAGGCCCGACCACTATACGACTACAGCGTCGTGA
TAGTCCTAGTGCCCCCCCTTGCGAGCAGGAGAATTGCCAGTTTGAACATC
CCTTTTTTCTTCTGTTGAATCTTATTTTCAGATACAACACTAAGAATTAG
CTCAGGGTGGTAGTGGTGGTATATGCCTTTAATCCCTGCACTCTGGGAGT
TCGAGGCCAGCCTGGTCTACAGAGTGAGTTCTAAGACAGCCAGGGCTACA
CTGAGAAGCTCTGTCTCAGGCGAAAAAAAAAAAAAGAATGAACAGAATAG
AAAAGACCAGGAGAACAGACGAGTTATGTCATCCGGTGGCTAAGTGAGAA
AGACCCCTCTTCCATTGAGGATGATAGAAGGCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_e07.g1 MSMg01no307_e07.g1 CHROMAT_FILE:
MSMg01no307_e07.g1 PHD_FILE: MSMg01no307_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:16 2005
         (291 letters)



>mm_chr10_98215969_98216659
          Length = 691

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ttctgactcagcgtcttgtaactgaggccagaaatacatgtttttgtgatatggaggctc 63
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttctgattcagcgtcttgtaactgaggccagaaatacatgtttttgtgatatggaggctc 432

                                                                       
Query: 64  ttaacataggccatatgacaaggaaactatccacttctgaaaaatggcgcttatgcaatt 123
           ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 431 ttaacataggccatatgacaaggaaactatccacttccgaaaaatggtgcttatgcaatt 372

                                                                       
Query: 124 aatacattggattgaacaaagcagaagcacatgtgtcctttgcttagggagaagatggct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aatacattggattgaacaaagcagaagcacatgtgtcctttgcttagggagaagatggct 312

                                                                       
Query: 184 gtgccatgggagcatagaggggtgctaagattcaccccagaagctagagattgctagtgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtgccatgggagcatagaggggtgctaagattcaccccagaagctagagattgctagtgt 252

                                                           
Query: 244 agagctgatgcatgggacttaagtaagattccccagctacattgctta 291
           |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agagctgaggcatgggacttaagtaagattccccagctacattgctta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)