BAC Information

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BAC

Clone NameMSMg01-307I18
Chromosome10 (Build37)
Map Location 113,358,735 - 113,359,409
singlet/doubletsinglet
Overlap genenone
Upstream gene4921506J03Rik, LOC100042655, LOC100042666
Downstream geneTrhde, 4930473D10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307I18.T7 (MSMg01no307_i18.b1)MSMg01-307I18.TJ (MSMg01no307_i18.g1)
ACCAG431875AG431876
length747749
length of high quality
(start - end)
706 (42 - 747)675 (75 - 749)
definitionCHROMAT_FILE: MSMg01no307_i18.b1 PHD_FILE: MSMg01no307_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:38 2005CHROMAT_FILE: MSMg01no307_i18.g1 PHD_FILE: MSMg01no307_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAAAATTCTACCCGTGAACTCCTACACCTGATAAACAACTTTTGCAAAA
TGGCTGGATATAAAATTAAATCAAACAAATCAGTAGCCTTCCTCTGCAGA
AAGGATAAATGGGCTGAGGAAGAAATTAGGGAAACAAATTCTTTCACATT
AGTCACAAATAATATAACATATCTTTGTGTAACTCTAACAAAGTAAGTGA
AAGAGCTGTATGACAAGAACTTCAAGTCTCTGCCAAAAGAAATCGAAAAA
AGTGGAAAAATATCCTATGCTCATTGAATGGTAGGATTAACATAGTAAAA
ATGGCCATCTTACCAAAAGCAATCTACAGATTCAATGTAATCTCTACCAA
AATTCTAAGTCAATTCCTCACAGAGATAGAAAGAACAATTCTCAACTTCA
TATGGAATAACAAAAACCCCAGGATAGTGAAAGCAATTCTCTACATTAAA
AGAACTTCTGGGGGAATCACCACCCCTGACCGCAAGCTGTACTACAGAGC
AATAGTAATAAAAAAAACCACATGGTATTGGTACAGAGACTGAAAGGTAG
ATGAAACATCATTCTCTAGTTTCTCTCCACCCTATCCCTTTTGAGAGTAT
ATCTCAATGGCTTGGAAATAACTAAGTACACATGACTACTGGCCAGCAAG
TTCCATTGGTTTGCTTTCAAGGTAGCTCTGGGATTACATGCACCCAC
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGTGCCAGGGTAGAAAGGATACCAA
ACGAGGACTTCCACCCTCTCAGACCCAAGGGGAATGGGAGACAGGAGACA
GAAACAGGAAAGTAAAGTGAATAAATAAACAAGTTAATGGAAAAAATATT
TGTAGGAAAAATATTATTGGAGTGAGATGTGGTATTGACCTATTATGACC
ATCTAATAAGGAGTAACTTAAATGATACTGAGAAATATGAACATCAACTT
AATCAATTAGAAGCCAGAAAAAAAACTAAACAAAACAAGCTGTGATGAAA
CTGTTGGAAGGAATACCTAAGATGAACCTACCTGTGACTGAAGAATGTAT
TTTTATTGCTGGTGTTCCCCAAAGCTGACCTTATGCATCTATAAACACTC
AGTGAATTACTTGAGAAAATGATCATATGCATTTTCTTTTTGTGTTCTGA
GTTCGTCTTCCAGATTTTTCTCTCCTGATGAGTCAATTTATCTACAGAAA
TGTATTTAGCTTTATCCTATGAAAAAGTCCTATACTATATAGAGGACAAA
GAGCCATGAAATCATTAGAACCAAGAGATTTGTATGAAAGCAGTCTTTCT
TTGCTTCCTTCCTAACCAAGAGCAGTGCTTGTTAGAGTAAGAACAATCCA
CTGGAGTTTTAGTATTTTCAGTTCTATCTAGTAAATATAAAGATTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_i18.g1 MSMg01no307_i18.g1 CHROMAT_FILE:
MSMg01no307_i18.g1 PHD_FILE: MSMg01no307_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:38 2005
         (675 letters)



>mm_chr10_113358536_113359609
          Length = 1074

 Score = 1160 bits (600), Expect = 0.0
 Identities = 657/678 (96%), Gaps = 6/678 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtgccagggtagaaaggataccaaacgaggacttccaccctctcag---acccaaggg 57
           ||||||||||||||||||||||||||||||||||||||||||||||||   |  ||||||
Sbjct: 200 atgtgccagggtagaaaggataccaaacgaggacttccaccctctcagagaa--caaggg 257

                                                                       
Query: 58  gaatgggagacaggagacagaaacaggaaagtaaagtgaataaataaacaagttaatgga 117
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 258 gaatgggagacaggagacagaaacaggaatgtaaagtgaataaataaacaagttaatgga 317

                                                                       
Query: 118 aaaaatatttgtaggaaaaatattattggagtgagatgtggtattgacctattatgacca 177
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaaaatctttgtaggaaaaatattattggagtgagatgtggtattgacctattatgacca 377

                                                                       
Query: 178 tctaataaggagtaacttaaatgatactgagaaatatgaacatcaacttaatcaattaga 237
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tctaataaggagcaacttaaatgatactgagaaatatgaacatcaacttaatcaattaga 437

                                                                       
Query: 238 agccagaaaaaaaactaaacaaaacaagctgtgatgaaactgttggaaggaatacctaag 297
           |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 438 agccag-aaaaaaacaaaacaatacaagctgtgatgaaactgttggaaggaatacctaag 496

                                                                       
Query: 298 atgaacctacctgtgactgaagaatgtatttttattgctggtgttccccaaagctgacct 357
           |||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| ||
Sbjct: 497 atgaacctacctgtgactgaagaatgtacttttattgctggtgttctcaaaagctgatct 556

                                                                       
Query: 358 tatgcatctataaacactcagtgaattacttgagaaaatgatcatatgcattttcttttt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tatgcatctataaacactcagtgaattacttgagaaaatgatcatatgcattttcttttt 616

                                                                       
Query: 418 gtgttctgagttcgtcttccagatttttctctcctgatgagtcaatttatctacagaaat 477
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtgttctgagtttgtcttccagatttttctctcctgatgagtcaatttatctacagaaat 676

                                                                       
Query: 478 gtatttagctttatcctatgaaaaagtcctatactatatagaggacaaagagccatgaaa 537
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gtatttagctttttcctatgaaaaagtcctatactatatagaggacaaagagccatgaaa 736

                                                                       
Query: 538 tcattagaaccaagagatttgtatgaaagcagtctttctttgcttccttcctaaccaaga 597
           |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 737 tcatcagaaccaagagatttgtatgaaagcagcctttctttgcttccttcctaaccaaga 796

                                                                       
Query: 598 gcagtgcttgttagagtaagaacaatccactggagttttagtattttcagttctatctag 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gcagtgcttgttagagtaagaacaatccactggagttttagtattttcagttctatctag 856

                             
Query: 658 taaatataaagattatag 675
           ||| ||||||| ||||||
Sbjct: 857 taagtataaaggttatag 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1074
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1064
Effective search space:   707560
Effective search space used:   707560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)