BAC Information

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BAC

Clone NameMSMg01-308F12
Chromosome10 (Build37)
Map Location 106,603,777 - 106,604,084
singlet/doubletsinglet
Overlap genenone
Upstream geneEG639162, Ppfia2, Olfr1556-ps1, 8430416H19Rik
Downstream geneLin7a, Myf5, Myf6, Ptprq, EG628870, Ppp1r12a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308F12.T7 (MSMg01no308_f12.b1)MSMg01-308F12.TJ (MSMg01no308_f12.g1)
ACCAG432452AG432453
length707716
length of high quality
(start - end)
321 (11 - 331)282 (60 - 341)
definitionCHROMAT_FILE: MSMg01no308_f12.b1 PHD_FILE: MSMg01no308_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:38 2005CHROMAT_FILE: MSMg01no308_f12.g1 PHD_FILE: MSMg01no308_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACCTATCCGGAGAGGATCCGCGGAATTCCACTCTTACTTCTTGAAACTA
CTGAGTGGATGAATTGGACCAGTTGGTTTTTTCTCTCTTGTCGCCCACCA
AAAACAAAAGTTATGGTTTTATGGACTACATAGATGGATTAGAGCAGACA
GACAGCTTTGACTACAACCATGATGGCATAAGTGATGCATGCAAAGAGTC
CTGCATAAATTACCAGTTGCTTTGATGTTCATTCAGTCCTCCCCTTCTGT
CTCCTCACCACCATTACTGGAGCATAACATCAGAACCTTCTTTTACCTAG
AGAAGTTCAGCCCTTTTTAGTGGTGAAAATGTTCTTTCTTTGACCCCCCA
CACCAACCAGGAAATCCAAAACATCCATCTGGAATCGCCCCCCATAGCTC
AAAGAGAAGTTTAAAATTAAGCCAAGAGCTGTGTCTCTTGTGCTTCTGAC
ACACCTCTGAGCATCTACCTATTACCAGAAAATGTTACTTCACAACTTCA
CCTATCTCAGATATCTATGGCACTGCGGAAGCCTTTGCAGACTTTCTTTT
TTTCCCTGAAAATTTATAGCCTACTATTTTGATCCGTACAACATATAACG
GATCTCGTCTCACCAATTGGCTGTCTATGTTTAGTTTGCCGGTTACCATT
CTCTTATAGACTTTCTTTAATTTAGTTTACCCCAACCTCACACATCTTAA
ACACCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTGACAGAGGAATCTCTAATGACTGAGGAGCACTTAAATGT
TCAATATCCTTAGTCATCGGAAAATGCAAATCAAAAAGACTCTGATACTC
CATTTTACACCTGTCAGAATTGCTAAGATAAAAAACTAAGAGGACGTATA
CCTAAAAGATGCTCCACCAAACCACAAGGACACTTGCTAAACTATTTTCA
TTACAGCTTTATTCATAATAGCCAGAAATTTGAAACAACCTAGATGTTCT
TCATTATCTATTAAGAATAGATAAAAAAAATATGGTATGTTCATTTTTTT
GTAATACCCCCCCCCATTAAAAACAAGAACATCATGAAATTTGTAGGCAA
ACACCATTCTGAGTTAAGTAATCCAGACCCATAAGAACATGTATGGTAGG
CACTCACTGTAAGTGAATCTTATTCATAAAGTACAAAATAACCATGCACC
AATCCGCAGACTGACCCATAAAGTATAACGGAGGACATAATGCAAGGCAC
TTGAGTCTCACTGGGAAGTGGATTTTAAACATTCAGACACTGTATTAAAT
ATCTGTGTTCACAGCCTATTACTATTCACATGCCCCCCAATCGTTATCCT
TGATTTAGGAACAGGCATTACCCCTCCAAGCCTATTTACCGAAAGGGCGC
TGCAATAAATCTGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_f12.b1 MSMg01no308_f12.b1 CHROMAT_FILE:
MSMg01no308_f12.b1 PHD_FILE: MSMg01no308_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:38 2005
         (321 letters)



>mm_chr10_106603564_106604284
          Length = 721

 Score =  526 bits (272), Expect = e-154
 Identities = 299/308 (97%)
 Strand = Plus / Minus

                                                                       
Query: 14  gaattccactcttacttcttgaaactactgagtggatgaattggaccagttggttttttc 73
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattccactcttaattcttgaaactactgagtggatgaattggaccagttggttttttc 462

                                                                       
Query: 74  tctcttgtcgcccaccaaaaacaaaagttatggttttatggactacatagatggattaga 133
           ||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 461 tctcttgtcgtttaccaaaaacaaaagttatggttttatggactaaatagatggattaga 402

                                                                       
Query: 134 gcagacagacagctttgactacaaccatgatggcataagtgatgcatgcaaagagtcctg 193
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 401 gcagacagacagctttgactacaaccatgatggcctaagtgatgcatgcaaagagtcctg 342

                                                                       
Query: 194 cataaattaccagttgctttgatgttcattcagtcctccccttctgtctcctcaccacca 253
           ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 341 cataaattagcagttgctttgatgttcattcagtcctcccctcctgtctcctcaccacca 282

                                                                       
Query: 254 ttactggagcataacatcagaaccttcttttacctagagaagttcagccctttttagtgg 313
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 281 ttactggagcataacatcagaaccttcttttacctagagaaattcagccctttttagtgg 222

                   
Query: 314 tgaaaatg 321
           ||||||||
Sbjct: 221 tgaaaatg 214


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)