BAC Information

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BAC

Clone NameMSMg01-309E17
Chromosome10 (Build37)
Map Location 32,159,823 - 32,160,134
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneTpd52l1, Ibrdc1, LOC666055, LOC667752, LOC100040638
Downstream geneEG667761, Trdn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309E17.T7 (MSMg01no309_e17.b1)MSMg01-309E17.TJ (MSMg01no309_e17.g1)
ACCAG433125AG433126
length723714
length of high quality
(start - end)
320 (46 - 365)627 (77 - 703)
definitionCHROMAT_FILE: MSMg01no309_e17.b1 PHD_FILE: MSMg01no309_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:50 2005CHROMAT_FILE: MSMg01no309_e17.g1 PHD_FILE: MSMg01no309_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCATTTCCCAAATATACAAAGTGTGAAATGCCTGTCATAAATAC
AAATGCTCATACTGTGCCCAGATGAGGCCAACTACATTACAGCAGCACGC
CTTCTTGCATTTTATCACAGCACTAAAATATGCAATTTCTTCCCTTGAAA
AAGCACTCTTATGGGCATTATAAAGAAATGAGCCACAATGAGCTCTGAGC
AATTATCACCCTAGAGGGAAACAGACTGATGCAGTTGAACAGGAATAGCT
GTTTAGACAACCAGACTCTAGTACTTCATGATCAGAGCGAATGGGCCTCA
TTCATCACCTGTTCTTGCTTTTACCACAACTCCACTTAGTGTGAGGACTA
AGGCAGGGGACTTCCGGACAAATCCTATTAAGCACATGAAAAGCTGACTA
TAAATAGAGGTGACTACATTAGTGTGACAATTAGCTGCTCATGAGGAGAT
GAGGCATATGTTAGGTTAGACTGTTTTTTTGCATAATGTTCTTTCATTAT
GTTGTGGCCATTAAAATATCTTGCTATTTATTTTTAATGCTTCTAGTATT
TCAATATTAGATTTCTAAATGTTTCAGTATTTAATGGCAAGGTTGAGGAA
GTAGTACTTAGAGGAAATTGCCATTGCATTTTAGTATCCTTTTAATGATA
AAGTAATATAAGACAATTTTAAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGAGCCATAGATGCAAGCATCAC
AAACAGAATACAATAGATTTAAGACAGAATCTCAGGTGCAGAAGATAAAA
TAGAAAACAATGACACAATAACCTAAGAAAATGCAAAAAAGATCCTAACC
CAACAGATCCAAGATATCCAGGACACAACGAGAAGACCAAACCTAAGGAT
AATAGGTATAGATGAGAAAGAAGAATTCCAACTTAAAGGGCCAGTAAGTT
CTTCAACTGCCTTATAGAAGAAAACTTCCCTAACCTATAGAAAGAGATGA
CCATGAACATACAAGAAGTCTACAGAACTCCAAATAGTTCGAGCCAAAAA
AAATTCCTCCTGTTGCATAATAACCAAAACACCAAATACATAAAACAAAG
AAAGAATATTAAAAGGATTAAGGGAAAAATGTCAAGTAACATATAAAGGC
AGACAACATAATTATACCAGACTTCTCACCAGAGACCAGAAAGCCTGAAG
TTCCTGGGCAGATGTCATACAGACCCTGACACACAAATGCCAGCCAAAGC
TACTATAACCAGCAAAACTCTCAATTACTCTAGATGGAGAAGCCAAAGTA
TTCCATGACAAAAGCAAATTTACACAATATTTTCCCAGTAATCCAGCTCT
TCAAAGGATAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_e17.b1 MSMg01no309_e17.b1 CHROMAT_FILE:
MSMg01no309_e17.b1 PHD_FILE: MSMg01no309_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:50 2005
         (320 letters)



>mm_chr10_32159619_32160338
          Length = 720

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccatttcccaaatatacaaagtgtgaaatgcctgtcataaatacaaatgctca 64
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccatttcccaaatatacaaagtgttaaatgcctgtcataaatacaaatgctca 264

                                                                       
Query: 65  tactgtgcccagatgaggccaactacattacagcagcacgccttcttgcattttatcaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tactgtgcccagatgaggccaactacattacagcagcacgccttcttgcattttatcaca 324

                                                                       
Query: 125 gcactaaaatatgcaatttcttcccttgaaaaagcactcttatgggcattataaagaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcactaaaatatgcaatttcttcccttgaaaaagcactcttatgggcattataaagaaat 384

                                                                       
Query: 185 gagccacaatgagctctgagcaattatcaccctagagggaaacagactgatgcagttgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagccacaatgagctctgagcaattatcaccctagagggaaacagactgatgcagttgaa 444

                                                                       
Query: 245 caggaatagctgtttagacaaccagactctagtacttcatgatcagagcgaatgggcctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caggaatagctgtttagacaaccagactctagtacttcatgatcagagcgaatgggcctc 504

                       
Query: 305 attcatcacctg 316
           ||||||||||||
Sbjct: 505 attcatcacctg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)