BAC Information

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BAC

Clone NameMSMg01-309M02
Chromosome10 (Build37)
Map Location 96,586,228 - 96,586,855
singlet/doubletsinglet
Overlap genenone
Upstream geneEG432491, LOC667380, Btg1, LOC628256, 4930556N09Rik
Downstream geneEG667407, Dcn, Lum, Kera, Epyc, 4921510H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309M02.T7 (MSMg01no309_m02.b1)MSMg01-309M02.TJ (MSMg01no309_m02.g1)
ACCAG433452AG433453
length788788
length of high quality
(start - end)
72 (51 - 122)628 (133 - 760)
definitionCHROMAT_FILE: MSMg01no309_m02.b1 PHD_FILE: MSMg01no309_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:25 2005CHROMAT_FILE: MSMg01no309_m02.g1 PHD_FILE: MSMg01no309_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCGAGAGGATCCGCGG
AATTCTTTCTCTTCTCCATGTCCCACCTCCTAATTCTTGCCCAAGCCATA
GGCCATAGGCTTTTTAATTGACAGGTGAAACATCCATACAATATACAATA
TGTTCTCTCTACATGCACCTATCTAACCNACCTATCTTCCATCTAGCTAC
CTACCTATCTATTTATCTACGTACCGATTAATAATGTATACCTGTATGGA
TATCATTCTCCCCNTCACACTATTCATATAATCTGCACCTAAGACGCCTG
CTTGTATGCATATCACCTAAGCAACCATCAATAATATATATCTGTCCCTG
TAACTATNAAGCTATCATCTATCCCTTGATCTATATTATTTACCACATAT
CCCGATTTATACTAGACCCACCATCTGTCTGTCATATACCCCAGAATCTA
TCAAGTGATTATTCTTTGTATGATTATATGTCCATTTCTCTGCAATACCC
ATCCAGACCACGTCTCTGACACCCCAACTATTTACACGGCAGACTATCTG
CCGTCTTTCTTCTGTTCCTCCGCTCTTCGATCCTTCCTCATACTCCTTCT
TTCACTCGCCCACCATGATATAATTATTATTCCACCCTCCCTCCCTTTCT
TCTCGTAACCTCTTTGCCCTCATCCTCTCTAATTCCTTCACTTACCTCTT
TTCCAATGTCTGCTCCCACCTAATCCCCCACCCTTATTACCACTGCTTCG
CACCCACATTCTTTTATAGTCTTCCATATCCCCCCCCN
CCTTAATTTTNTTNAATTTTTTAACACCTCCCAATNNNNNNTTCCNNCNN
NNCCCTCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGCTATGTCTCAATAT
TTGATCAGTTATGAGGCTGCACAAGAATCACTGCTCACTATGAAAAGTCT
GTCTGTTGGGTTGGCTTTATCAGACTACAGATTGTTTGGAAGGCAACATC
AGTATACCACTTTTGAATTCACTGAAATATGCTCACTATGTAAGTAGTAC
CTCTATGTCTAGATGTGGCTTTGCATGACTACCAAGAGGTATATTCCTGA
GCAAGGACATGATATTAGGAGAGGTTTGCCACATGTTTTTGTTGGTAAGT
TTTTTTTCTGTCTAGGATTACTGAATAAATCAGTTCTATGAGCAGTTAGC
AGCATAGCTCTTAGTCTTCTAGTGTGCATTGAAATATGAAATTTATATGT
GCCCCCTGATAGTGTCAGTTGGTATTTAAGTCTTATACAAAAGATTTTAT
CAATAAAGTGTATCAGTTATTACTGTCTTCTAGATACTGGGACAAGTGCT
ATCCATAGCCAACAAAATGAATGTCAACTTCATGCAATTCCGTCATAGCA
CAGTGACTTTAAACAAATAAATTGAATGAAGGAGAAGTGCAAGGTGCTGT
GGCAGCTTAGAAAGAGGTGATTTTAAAGCTGAATTTTAAAGAATCACTGT
AGGAAATTGAGATTTTCACATTAAAATCAACAGGGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_m02.g1 MSMg01no309_m02.g1 CHROMAT_FILE:
MSMg01no309_m02.g1 PHD_FILE: MSMg01no309_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:25 2005
         (628 letters)



>mm_chr10_96586028_96587055
          Length = 1028

 Score = 1176 bits (608), Expect = 0.0
 Identities = 623/628 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgctatgtctcaatatttgatcagttatgaggctgcacaagaatcactgctcactatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 catgctatgtctcaatatttgatcagttatgaggctgcacaagaatcactgctcactatg 769

                                                                       
Query: 61  aaaagtctgtctgttgggttggctttatcagactacagattgtttggaaggcaacatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 aaaagtctgtctgttgggttggctttatcagactacagattgtttggaaggcaacatcag 709

                                                                       
Query: 121 tataccacttttgaattcactgaaatatgctcactatgtaagtagtacctctatgtctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tataccacttttgaattcactgaaatatgctcactatgtaagtagtacctctatgtctag 649

                                                                       
Query: 181 atgtggctttgcatgactaccaagaggtatattcctgagcaaggacatgatattaggaga 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 648 atgtggctttgcatgactaccaagaggtatatttctgagcaaggacatgatattaggaga 589

                                                                       
Query: 241 ggtttgccacatgtttttgttggtaagttttttttctgtctaggattactgaataaatca 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 588 ggtttgccacatgtttttgttggtgagttttttttctgtctaggattactgaataaatca 529

                                                                       
Query: 301 gttctatgagcagttagcagcatagctcttagtcttctagtgtgcattgaaatatgaaat 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 528 gttctatgagcagttagcagcatagctcttagtcttctagtgtgtattgaaatatgaaat 469

                                                                       
Query: 361 ttatatgtgccccctgatagtgtcagttggtatttaagtcttatacaaaagattttatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttatatgtgccccctgatagtgtcagttggtatttaagtcttatacaaaagattttatca 409

                                                                       
Query: 421 ataaagtgtatcagttattactgtcttctagatactgggacaagtgctatccatagccaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ataaagtgtatcagttattactgtcttctagatactgggacaagtgctatccatagccaa 349

                                                                       
Query: 481 caaaatgaatgtcaacttcatgcaattccgtcatagcacagtgactttaaacaaataaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 caaaatgaatgtcaacttcatgcaattccgtcatagcacagtgactttaaacaaataaat 289

                                                                       
Query: 541 tgaatgaaggagaagtgcaaggtgctgtggcagcttagaaagaggtgattttaaagctga 600
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgaatgaaggagaagtgcagggtgctgtggcagcttagaaagaggtgattttaaagctga 229

                                       
Query: 601 attttaaagaatcactgtaggaaattga 628
           ||| ||||||||||||||||||||||||
Sbjct: 228 attctaaagaatcactgtaggaaattga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)