BAC Information

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BAC

Clone NameMSMg01-309O14
Chromosome10 (Build37)
Map Location 78,245,695 - 78,246,299
singlet/doubletsinglet
Overlap geneSlc1a6
Upstream geneLOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105
Downstream geneOlfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309O14.T7 (MSMg01no309_o14.b1)MSMg01-309O14.TJ (MSMg01no309_o14.g1)
ACCAG433565AG433566
length752725
length of high quality
(start - end)		320 (46 - 365)605 (77 - 681)
definitionCHROMAT_FILE: MSMg01no309_o14.b1 PHD_FILE: MSMg01no309_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:37 2005CHROMAT_FILE: MSMg01no309_o14.g1 PHD_FILE: MSMg01no309_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTATAGAAAAATCTCTAATGGCCCAGAAGCACTTAAAGAAACTT
TCAAAGTCCTTAGTCATCAGAGAAATGCAAACCAAAGATGACAGTGAAGA
CTCCAAACTTAAAGGGTCAGTAAGTATCTTCAACACAATTATATAAGAAA
ACTTCCCTAACCTAAAGAAATAGATGCCAATAAACATACAAGAAACCTAC
AGACCTCCAAATAGATTGGAATAGAAAAGAAATTTCTCCAATAACATAAT
AGTCATAACAACAAATGCACAAAACAAAAAAAGAATATTAAAAGCAGTAA
GGGGAGAAGGTCAAGTTTTATATATAACCACCCCACCATATCAGAATTAA
ACTGGATCTATCTCCAGAGACCATGAAAGCTAGAATATCCTGAGCAGATG
TCGTACAGACCCTAACAGAACAGAAATGCCAGCCCAAGCTACTATATCCA
GCAAAACTCTCAGTTAGCATAGATGGAGAAACTAAGATCTTCCATTACAA
AAACAAATTTACACAATATCTTTCCACAAATCCAGCCCTACAAAGGATAA
TATATGGAGAAACTCCAACACAAGCAGGGATACTACACCCTATAAAGAGC
AAAAAAGTAATCTTCTTTCTATAGACCTAAAAGAAGATAGCCACACAAAC
GTAATTCCATTTCTAACAACAAAAATAACAGGAAGCAACAATCCCTATTC
CA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATGCTGTGTGATCACATTCATG
TGCGAACTACAGATCTTGACCTTGCCCAAACAGAGTGCAACAGTGATTCT
GAAAGGGGTGACAGAGCACGGGAGGGTGATGATAGTGCTCAGCAGTTTAT
TCTTTTATGAAGGATGAGAAGACAGCAGCTTGAATGCTCCCGGCACAAAG
GAGTGCCAAGTGTTTAATGGGGATGGGAGTGTTAAGGAGCTTGAGCTGGC
ATCTTGCATTACCTTCATGTTCTGAAAGATTTAACTATGCCTGTGAGCGG
GAGCAATTATCCACTGTCCACTGAAATAAAGAGGAAGAATGAACTAGTGA
CAAATCACAGCTGTGTGAGGTTACAGTGATCTAGGCGGGCCTGGCGAAGG
TGTGGAAGACAGCCTTTCATTTGAGCTCAATACTGTATCTGCTCTCTTTC
TGCTTATTTATTTAATTTTTAAAAAAATTGTTAATTACTACCTACTGGCT
GTCTTTCCTCCACCAGTGTTGGGATGGAACACAGGTTTTCATGTACTCTT
GATGAACGATCTACCTGTGAGCCATACCCTTATTACCCCAGCACATATTC
GCTTTTACTAGGCTATGTCAGCCTTGTGTGTGTGTGTGCGCGTTTTTCTC
CTTTCCTTTCCTCTTCTTTCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_o14.g1 MSMg01no309_o14.g1 CHROMAT_FILE:
MSMg01no309_o14.g1 PHD_FILE: MSMg01no309_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:37 2005
         (605 letters)



>mm_chr10_78245495_78246499
          Length = 1005

 Score = 1123 bits (581), Expect = 0.0
 Identities = 599/605 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgctgtgtgatcacattcatgtgcgaactacagatcttgaccttgcccaaacagagt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||
Sbjct: 201 aaatgctgtgtgatcacattcatgtgcgaaccacagatcttgaccttgaacaaacagagt 260

                                                                       
Query: 61  gcaacagtgattctgaaaggggtgacagagcacgggagggtgatgatagtgctcagcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaacagtgattctgaaaggggtgacagagcacgggagggtgatgatagtgctcagcagt 320

                                                                       
Query: 121 ttattcttttatgaaggatgagaagacagcagcttgaatgctcccggcacaaaggagtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattcttttatgaaggatgagaagacagcagcttgaatgctcccggcacaaaggagtgc 380

                                                                       
Query: 181 caagtgtttaatggggatgggagtgttaaggagcttgagctggcatcttgcattaccttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagtgtttaatggggatgggagtgttaaggagcttgagctggcatcttgcattaccttc 440

                                                                       
Query: 241 atgttctgaaagatttaactatgcctgtgagcgggagcaattatccactgtccactgaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgttctgaaagatttaactatgcctgtgagcgggagcaattatccactgtccactgaaa 500

                                                                       
Query: 301 taaagaggaagaatgaactagtgacaaatcacagctgtgtgaggttacagtgatctaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagaggaagaatgaactagtgacaaatcacagctgtgtgaggttacagtgatctaggc 560

                                                                       
Query: 361 gggcctggcgaaggtgtggaagacagcctttcatttgagctcaatactgtatctgctctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggcctggcgaaggtgtggaagacagcctttcatttgagctcaatactgtatctgctctc 620

                                                                       
Query: 421 tttctgcttatttatttaatttttaaaaaaattgttaattactacctactggctgtcttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttctgcttatttatttaatttttaaaaaaattgttaattactacctactggctgtcttt 680

                                                                       
Query: 481 cctccaccagtgttgggatggaacacaggttttcatgtactcttgatgaacgatctacct 540
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctccaccagtgttgggatggaatacaggttttcatgtactcttgatgaacgatctacct 740

                                                                       
Query: 541 gtgagccatacccttattaccccagcacatattcgcttttactaggctatgtcagccttg 600
           ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 gtgagccatacccttcttaccccagcacatattcgcttttactaggctatggcagccttg 800

                
Query: 601 tgtgt 605
           |||||
Sbjct: 801 tgtgt 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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