BAC Information

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BAC

Clone NameMSMg01-311F21
Chromosome10 (Build37)
Map Location 124,371,461 - 124,371,833
singlet/doubletsinglet
Overlap genenone
Upstream gene4930503E24Rik, LOC671416
Downstream geneSlc16a7, LOC100042987, EG668313, LOC100042992, LOC668317, LOC100042994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311F21.T7 (MSMg01no311_f21.b1)MSMg01-311F21.TJ (MSMg01no311_f21.g1)
ACCAG433889AG433890
length736737
length of high quality
(start - end)
381 (46 - 426)224 (146 - 369)
definitionCHROMAT_FILE: MSMg01no311_f21.b1 PHD_FILE: MSMg01no311_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:12 2005CHROMAT_FILE: MSMg01no311_f21.g1 PHD_FILE: MSMg01no311_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATCTACGCTCATAGATTTGCTGCCTCAGGTTCCTCACCAACAC
CAGCATCTCATAATCTATTTTATCAATAAGAATGAATGTAAAAACGCTGA
AAGCAAATGTTAAAAGGGCATAAATTCAATCATTTTATAAATAATTTGAA
CAATCTCTTGTTTTTCAGATTATTTGTGTAAAATAATACATGTACATACC
AGTTAACTGTGTACTTACTACTGTGTAATGTTTATTCTGTGCCAAGTTTC
TTGCGAAGAGCATGAATAAAATGAGATTATTAAAACTGAAAATTAACTTC
AATTATCAAATAATTTAATATAATTAAAAATTGCTGAGACTTTAAGTGTC
AGGCTAAGTATTTATTTCTGATCCACTCTATAGAAACTGTCAGATGTATT
GGATTAGCATTGTATTAATTTTGGAACTGAGTGCTATATCATTAAGAATG
TTTTTATAAATATCTAAATTTTTAGATGTAAGGAATAAAAATTAAAACTG
GAAGAGTAAACACACAATTAGCATGTTCAAAGATCATTGACCATAAAACA
AGTCACTGACAACTTAGTGGGTAAGTAAGACTCAGAGCACAAAGACATCC
AATACCAAGGTACACGCAAGCAGAGCTTTGTGCATGACAGAGGACTGCTT
GATCCTACACCCTATTCTGGCTATGGTTTTTCTGAA
ACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGACATG
CAAATCAAAACAACCCTGAGATTCCATCTCACAGCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGTTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCAGAAAATTGTATATAGTACTACAGGAGGA
TCCCGCAATACCTCTCCTGTTCATANATCCCGAANACGTNNCCCCAGTAA
GAAGGACACATGGTCCACTATGTTCCCCCCAAACAATTAATNATAAGCNG
GGGCTGGAGGGAGCCCANATNCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATTCACACAGTGGAGTACTACTCAGCTATTGAAAAGAATGAA
TTTATGATATTCCTAGGCAAATGGATTGACCTGGAGGGCATCATCCTGAA
TGAGATAACCCCATCACAAAAGAACTCACACAATATGGACTCACTGATAA
GTGGATATTAGCCCAGAAACTTATATTACCCAAGATATAACATACCATTT
TGAAAACCATGAAACTTCAGAAAACGAAGACTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_f21.b1 MSMg01no311_f21.b1 CHROMAT_FILE:
MSMg01no311_f21.b1 PHD_FILE: MSMg01no311_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:12 2005
         (381 letters)



>mm_chr10_124371322_124372102
          Length = 781

 Score =  675 bits (349), Expect = 0.0
 Identities = 367/373 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatatctacgctcatagatttgctgcctcaggttcctcaccaacaccagcatctc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattcatatctaccctcatagatttgctgcctcaggttcctcaccaacaccagcatctc 453

                                                                       
Query: 65  ataatctattttatcaataagaatgaatgtaaaaacgctgaaagcaaatgttaaaagggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ataatctattttatcaataagaatgaatgtaaaaacgctgaaagcaaatgttaaaagggc 393

                                                                       
Query: 125 ataaattcaatcattttataaataatttgaacaatctcttgtttttcagattatttgtgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ataaattcaatcattttataaataatttgaacaatctcttgtttttcagattatttgtgt 333

                                                                       
Query: 185 aaaataatacatgtacataccagttaactgtgtacttactactgtgtaatgtttattctg 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaaataatacatgtgcataccagttaactgtgtacttactactgtgtaatgtttattctg 273

                                                                       
Query: 245 tgccaagtttcttgcgaagagcatgaataaaatgagattattaaaactgaaaattaactt 304
           |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 272 tgccaagttttttgcgaagagcatgaataacatgagattattaaaactgaaaattaactt 213

                                                                       
Query: 305 caattatcaaataatttaatataattaaaaattgctgagactttaagtgtcaggctaagt 364
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 212 caattatcaaataatttaatataattaacaattgttgagactttaagtgtcaggctaagt 153

                        
Query: 365 atttatttctgat 377
           |||||||||||||
Sbjct: 152 atttatttctgat 140


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)