BAC Information

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BAC

Clone NameMSMg01-312F01
Chromosome10 (Build37)
Map Location 12,139,244 - 12,139,561
singlet/doubletsinglet
Overlap geneUtrn
Upstream geneEpm2a, EG666732, LOC100039343
Downstream geneLOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312F01.T7 (MSMg01no312_f01.b1)MSMg01-312F01.TJ (MSMg01no312_f01.g1)
ACCAG434570AG434571
length742614
length of high quality
(start - end)
322 (42 - 363)---
definitionCHROMAT_FILE: MSMg01no312_f01.b1 PHD_FILE: MSMg01no312_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:22 2005CHROMAT_FILE: MSMg01no312_f01.g1 PHD_FILE: MSMg01no312_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATGTGTTTTGTGCTTGCAGTGAACACATTTTACTGACTGAGCCGTCTCC
AGGATCCACTTAGAGATCTTTCTTTCCAAGTAAAAATGAACAGAAAACCA
TGCAAAATAATTACATTCTCTGCTTTTGATATACTACGCTGAAAATGCCT
CACCCTGATTAACATAAATTTCCCACCATTTTCCAAGAGAGATACAAGGA
GGAGAAAGGAAGGGGCATCTGATTAAATTGGATGCCACCAAATCCCTTTT
GAACAAGATTTATGAGCTACTAGATAGTGTGGGTGGGTGTTCTTCAAATC
CTATGCAGAGCTCTTTGTTATTTGCTGCCCCCCCTTTTCGGGTGGACCCC
TCTTTGGCCCGGGGGTCCTCCCCCCTTTCCAGAGAAACAATTTATGTGAG
TGGGTAGGGCTTTGTTTTTTCTGTCTTCCCCTAATTTCTTTCATTGTTAA
CCTTTCTTATCTACTACATTTCATTTATTATCTCCTCCTTCCTATCCATA
TATCTTTACTATCGTTCTATTAACCATCATTTACCATTGTATTCTCATAT
TTCTTTCTTATTTCGTCTATCTTTATTATATAAAAGCAGCCCATTGACTT
TACTAGTAATGTGTTTCTATTGGTTCACATTACCCGAATATACATCTTAC
ACATTCTTTTCCCCATTTTTATATTTTCCGTCTTTCTTTATG
AATGAAGGGCGCGAGGGTGCCTTCGAAAAGGGNNNNAGAGGTTTCCAAAA
AGGGNGNGGAGGGGGNNANNNGAAAAANANNAATTTTATCTAAAAAGGGG
GGNNNNNANAAAGNGANAANGAAAAGGANAAGAAAAAGAAAGGAAAGAGA
GGAAGAGGGAGAGGGAGGGGGGGGANGGGGGAGAGAGGGGGTTTTGTTAG
AAGGGGGAGAGATGGGATAGAGAAGGGAAGAAAGAGGGANNAATTTTTTG
TTTGGTGGGAGAAANGAGGANGAAAAGGTTTGTGGTTCCCCCCCCCCCCC
AAAAAAAGAAGGGGGGGGGGGNNGGNNNAGAAAAAAAAAAAAAAAAAGGG
GNNGGGNNGGGGGNNGNNAGNGANNNGAGAGGGGAGGAGAAGAAAGAGAA
GGGGAAAGGAAGAGGGGGAAGGGAGAAAAGGGGGGGAGAAGAGGGGAGGG
GGAAAGGAGGGGGAGGGGAAGAGCGGGGAAGGGGGAAAGAAGAGGAGAGG
AGAGGAGAAGGAGAGAAGAGGGGAAAAGGGAAGGGGGAAAGGGAGGGGGG
TTTTTTGGAGAAGGAATCAACGGAAAATGCGGGGTTGGAAAGGGGTTTGG
GGGGGGGGCACGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_f01.b1 MSMg01no312_f01.b1 CHROMAT_FILE:
MSMg01no312_f01.b1 PHD_FILE: MSMg01no312_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:22 2005
         (322 letters)



>mm_chr10_12138985_12139706
          Length = 722

 Score =  571 bits (295), Expect = e-167
 Identities = 313/319 (98%), Gaps = 2/319 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgtgttttgtgcttgcagtgaacacattttactgactgagccgtctccaggat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 577 gaattcatgtgttttgtgcttgcagtgaacacattttactgactgagccatcttcaggat 518

                                                                       
Query: 65  ccacttagaga-tctttctttccaagtaaaaatgaacagaaaaccatgcaaaataattac 123
           ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ccacttagagact-tttttttccaagtaaaaatgaacagaaaaccatgcaaaataattac 459

                                                                       
Query: 124 attctctgcttttgatatactacgctgaaaatgcctcaccctgattaacataaatttccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 attctctgcttttgatatactacgctgaaaatgcctcaccctgattaacataaatttccc 399

                                                                       
Query: 184 accattttccaagagagatacaaggaggagaaaggaaggggcatctgattaaattggatg 243
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 398 accattttccaagagagatacaagaaggagaaaggaaggggcatctgattaaattggatg 339

                                                                       
Query: 244 ccaccaaatcccttttgaacaagatttatgagctactagatagtgtgggtgggtgttctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ccaccaaatcccttttgaacaagatttatgagctactagatagtgtgggtgggtgttctt 279

                              
Query: 304 caaatcctatgcagagctc 322
           |||||||||||||||||||
Sbjct: 278 caaatcctatgcagagctc 260


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)