BAC Information

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BAC

Clone NameMSMg01-312I24
Chromosome10 (Build37)
Map Location 62,931,491 - 62,931,779
singlet/doubletsinglet
Overlap geneCtnna3
Upstream geneVps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906
Downstream geneLrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312I24.T7 (MSMg01no312_i24.b1)MSMg01-312I24.TJ (MSMg01no312_i24.g1)
ACCAG434745AG434746
length795759
length of high quality
(start - end)
44 (65 - 108)289 (68 - 356)
definitionCHROMAT_FILE: MSMg01no312_i24.b1 PHD_FILE: MSMg01no312_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:40 2005CHROMAT_FILE: MSMg01no312_i24.g1 PHD_FILE: MSMg01no312_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCGCTAAACGACTCCTATATTTCGGACTCCGCGGAATTCACAAACA
ATACCATAAATAACATGAATTTGTTGTGAATACACATTCTTTTCAGCAGC
TTCGGGATCTCCCCTCATGATAAATCACACTTCTGTCTATAAATCAAGTT
TTATCAACCACAAAAAATATTAATGAAATATTTCACGAGTCTTAATACAT
GAATTTAAAAGTATAAATCAGTAGGAACAGATATTATACTAGCATCATGA
TAAAACAACACACGTTTGAGTCAAAACATTCTGAAACTTTACTAATATCA
AGATGATATATTTTTTGTTTCATCGAACACCTTAACGTATTCTTAAATTT
TATATTTCTGACCCCCCACTCTTGGCGGTTTGTATACAGCTTGTCATCAT
TTGGACCCCCCCTTTTAAGATCCCCAGGACCGCAATTATACCTCTTACTT
CTTCAATACCCGTTTTTCTTCTGAGTACCATTACTCTGCGCCCTCTTTGT
AATTCACATTGTACTCGCCACTGTTTGTTTATTAAAAATGTTAATCTTTC
TTGTTATTCCCCTCCTTTCCATATTTTTTTAAATAATATAACATTAGTCC
CTTTACTATTAAATCTTTTAATTTATTATTATCCTCACTACCTTAATTTT
CTTATTTCCTTATGTTCTCCCCTTTATTTTTATCACGTCAAACACGATCC
TCCCCTCTCGAGTTCTAATTTTCTCTTTATTTTATTAGTGGAAACCAGAA
GCGTCCAATCTCCTTTATTTTCCCCCCGTTTTTTCACTCCCTTCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCTCCCACTGCCAGGTCTGTAGTGTATCCCTC
CCGTTGACAGGGCTTAGTTAGGTTCAGGGTTACAGTTTCATTCTTTGCCT
CTTTTGTTCTTGGGGTGATAAACTTCCAGGGAGAATGGTGGAAAACACGC
GAAGGTTGATTCATAGAGTTCAGATTTTAATTACTTAGTTATCCTCTTGG
CTATGTCGAATTCTTGGGATATTTAAATATTTTTTGATGTATTTTAGAGA
TTTTCTAATTTTTATTTTTGATAGAGGTTCTTGCTATGTCACGTAGATCT
TGTACTCTATCCTTACCCCAGGNACGTNTCGCACTAGCAACCCTCCTGCC
TTAGCCTCCTCACCAACTGGTGATATAAAAAAAAGGAAAGGTGCGTGCGA
TTAAAACCTTTTTCTTAACATCACTCGTATTTTGCAGTGTATGAGCACGT
GCATATTATAGCTTCATGCGGATGGCGAAGACAGTTTATGGGAGTTGGCT
CTCTTCTTTCCCAGTGTAGGTTCTCGGTTTCCAACCCAAGTTATTAAATC
TGGCAGAAAGTGGCTTTATCTACTTTTCCATCCCATGTATTTCCCTGATT
TTGAGAAATGTTTCCCGACCCGTATTTGTTTTAAATGAGACACGTGTGCC
CTCTTTGAGGTTTATTGCCCTTGATTTCATAAAATCAATGACCATTTTAT
TCCTAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_i24.g1 MSMg01no312_i24.g1 CHROMAT_FILE:
MSMg01no312_i24.g1 PHD_FILE: MSMg01no312_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:40 2005
         (289 letters)



>mm_chr10_62931291_62931979
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctcccactgccaggtctgtagtgtatccctcccgttgacagggcttagttaggttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctcccactgccaggtctgtagtgtatccctcccgttgacagggcttagttaggttcag 260

                                                                       
Query: 61  ggttacagtttcattctttgcctcttttgttcttggggtgataaacttccagggagaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttacagtttcattctttgcctcttttgttcttggggtgataaacttccagggagaatg 320

                                                                       
Query: 121 gtggaaaacacgcgaaggttgattcatagagttcagattttaattacttagttatcctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggaaaacacgcgaaggttgattcatagagttcagattttaattacttagttatcctct 380

                                                                       
Query: 181 tggctatgtcgaattcttgggatatttaaatattttttgatgtattttagagattttcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggctatgtcgaattcttgggatatttaaatattttttgatgtattttagagattttcta 440

                                                            
Query: 241 atttttatttttgatagaggttcttgctatgtcacgtagatcttgtact 289
           |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 atttttatttttgagagaggttcttgctatgtcacgtagatcttgtact 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)