Query= MSMg01no312_k19.b1 MSMg01no312_k19.b1 CHROMAT_FILE:
MSMg01no312_k19.b1 PHD_FILE: MSMg01no312_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:48 2005
(239 letters)
>mm_chr10_27837144_27837782
Length = 639
Score = 455 bits (235), Expect = e-132
Identities = 238/239 (99%)
Strand = Plus / Plus
Query: 1 gctggtaggtatcaggggacactgagaagcctgtggatgacaggatagagaacactagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctggtaggtatcaggggacactgagaagcctgtggatgacaggatagagaacactagat 260
Query: 61 atagtgcagcaatcggaggagacagaggtgagtatgagtccagatcagagagatgaagct 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagtgcagcaattggaggagacagaggtgagtatgagtccagatcagagagatgaagct 320
Query: 121 gaggtggaaacagtagttcagggaaaggttgagtgcggagaagggagaatggttaaatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggtggaaacagtagttcagggaaaggttgagtgcggagaagggagaatggttaaatgg 380
Query: 181 actggcttggaagatttgctggactgctggctgtgagaaatttgtaaacaccacctttt 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actggcttggaagatttgctggactgctggctgtgagaaatttgtaaacaccacctttt 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no312_k19.g1 MSMg01no312_k19.g1 CHROMAT_FILE:
MSMg01no312_k19.g1 PHD_FILE: MSMg01no312_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:48 2005
(671 letters)
>mm_chr10_27992170_27993240
Length = 1071
Score = 1201 bits (621), Expect = 0.0
Identities = 660/673 (98%), Gaps = 3/673 (0%)
Strand = Plus / Minus
Query: 1 tttgtttagctctgagccccattttt-aatggggttataggaagcaacaactatagtcat 59
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 909 tttgtttagctctgagccccatttttaaatggggttataggaagcaacaattatagtcat 850
Query: 60 ttttatctgaaggaaaaatagataccagcttctatgtctattttccttatattttcttcc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ttttatctgaaggaaaaatagataccagcttctatgtctattttccttatattttcttcc 790
Query: 120 taaactcttgaaggaaatacttaaaatatttacactaatatag-aaattagatattttta 178
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 789 taaactcttgaaggaaacacttaaaatatttacactaatatagaaaattagatattttta 730
Query: 179 tttttcttatttagtctatggaatgacactgaaatattcactgcacaaagcataattaca 238
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 729 tttttctgatttagtctatggaatgacactgaaatattcactgcacaaagcataaataca 670
Query: 239 tttaactttgttttctctttgaaaacccagtacttccttcatatactacatgcagatgaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tttaactttgttttctctttgaaaacccagtacttccttcatatactacatgcagatgaa 610
Query: 299 aagaaaaaagattagtctttgaaaatgacaacacacaaaccagatattcaattgctttgt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aagaaaaaagattagtctttgaaaatgacaacacacaaaccagatattcaattgctttgt 550
Query: 359 actggaaattaaaaatcacagactcatacgaggtaactatcaaatattagcacagacaac 418
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 549 actggaaattaaaaatcacagactcatacaagttaactatcaaatattagcacagacaac 490
Query: 419 agctgaaaggagaattaatttgaagttgatgcacacacttttcatctacagtatggaatt 478
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agctgaaatgagaattaatttgaagttgatgcacacacttttcatctacagtatggaatt 430
Query: 479 gaattgataatgaaggtgaggtatcagaaagtatcactgagctgatgataaggaaacaat 538
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 429 gaattgataatgaaggtgaggtatcagaaagtatcactaagctgatgataaggaaacaat 370
Query: 539 tctcatgtttttgcattttatccatgttattttatatagctgtgtaaagactgtctcaat 598
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 369 tctcatgtttttgca-tttatccatgttattttatattgctgtgtaaagactgtctcaat 311
Query: 599 caaatgaaggctaaataattaataaagacaaaatataagtgtgttgtctcagatccagct 658
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 310 caaatgaaggctaaataattaataaagacaaaatgtaagtgtgttgtctcagatccagct 251
Query: 659 aaccagactaaaa 671
|||||||||||||
Sbjct: 250 aaccagactaaaa 238
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
