BAC Information

Click to search

BAC

Clone NameMSMg01-312L14
Chromosome10 (Build37)
Map Location 48,694,541 - 48,694,829
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546562, LOC100041689
Downstream geneGrik2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312L14.T7 (MSMg01no312_l14.b1)MSMg01-312L14.TJ (MSMg01no312_l14.g1)
ACCAG434860AG434861
length741722
length of high quality
(start - end)
315 (45 - 359)289 (69 - 357)
definitionCHROMAT_FILE: MSMg01no312_l14.b1 PHD_FILE: MSMg01no312_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:52 2005CHROMAT_FILE: MSMg01no312_l14.g1 PHD_FILE: MSMg01no312_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCGGTTTGTGAGAATCTTATTGATTATTTTTACATCTATATTCATAAG
AAATATTGGTTTGAAGTTATCTTTCTTTGTTGGATCTTTGTTTAGTTTTG
GTATAAGCATAATTGTGGCTTAACAAAATGAATTGGGTATTGTTTATTCT
GTTTCTGTTTTGTGGAATTGTTTGAAGAGTATTGGTATTAGGTCTTTTTG
GAAAGTCTGATAGAATTCCACACAAAAACCATCTGGTTCTGGGCTTTTTC
GGTTGGGAGACTATGAATGACTGCTTCCATTTCTTTAGGGGTTATGGAAC
TGTTTATATGTTTTATCTGCACCGCCCCCCCCCCCTTTGGTACCTGGTAT
CTGTCTAGAAAATTGTCCCCCCCACCACAAAAAATCCAGTTTTGTTGAGT
AAAGGCATTTATAGTATGATCTGATGATTTTTTGGATTTTCCCAGTTTCC
GTTGTTATTTCTCACTTTTCATTTCTGACTTTGTTAATTTGCATACTGCC
TCTGTGTCACCTTGTCTACTCTAACTGCTTATCTATCCTGCTCCTTTCCT
CCTATTATCTTAGGTTCTTTTGTTTTGATCCCTTTACATATCCTTTATGT
TTCCCGCTTTTTTTTCTTTTTTTCTCGCTTTTTTATCATTTTTTTTCTCT
CTCACCGTTTCCTTCCCTTTTATCATTTTATTTCCCCCCCG
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTATGCCAACAGATATCATATTCTATGCCAACA
GATGACCCTAAATCAGAAAAGATTAAACAATACTTTTGCCCCAAATAATA
TTTATACATGTTTGGATATAACTATATATCAGACTGTATCTTATTTTCCT
TCAAAAATGCTGAGACAAAGTCATTATTAAGCTTCTTTCTTTTCAAATAT
GTACATTTAAATTAAAGAGTTTAATGACTTGGCCAAAAATCTAGTAAGAG
GAGACAACCAGGATTGGAACTTATGTGAGTTTGTTTTCAAGGTGCCCTGA
TTTCTTATATTTTTTATACTCCACACCACCAATAATATTAGCTATGTATT
ATAAACAATCTTCTAACCGCACAGATAAATAAGATATAAAAGGTTTGGTG
TGTTAATAACCTATATGACATGTAACAGAGGAAGCAATGCAGCAAAGTTT
AATAACTAAAGATGGACAAAAATTTAGTATCCATGAACATATTGACATTT
TACAAAATTCTAAGTGGTAAGTATTCTAATAATTATAATCAAAGAAATTT
TTGGCAGAGTTAATGGTGAACAGGCCCACAAGTGAGTATCACTGGATGTA
AAATCCAAACTCAGCTTAGTCTGATTTTCAGACAATCCAGGTAATTTCAT
CCTCAACAGGGATGCTCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_l14.g1 MSMg01no312_l14.g1 CHROMAT_FILE:
MSMg01no312_l14.g1 PHD_FILE: MSMg01no312_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:52 2005
         (289 letters)



>mm_chr10_48694512_48695200
          Length = 689

 Score =  513 bits (265), Expect = e-150
 Identities = 283/289 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgccaacagatatcatattctatgccaacagatgaccctaaatcagaaaagattaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tatgccaacagatatcatattctatgccaacagatgaccctaaatcagaaaagattaaac 259

                                                                       
Query: 61  aatacttttgccccaaataatatttatacatgtttggatataactatatatcagactgta 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agtacttttgccccaaataatatttatacatgtttggatataactatatatcagactgta 199

                                                                       
Query: 121 tcttattttccttcaaaaatgctgagacaaagtcattattaagcttctttcttttcaaat 180
           |||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 198 tcttattcaccttcaaaaatgctgcgacaaagtcattattaagcttctttcttttcaaat 139

                                                                       
Query: 181 atgtacatttaaattaaagagtttaatgacttggccaaaaatctagtaagaggagacaac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 138 atgtacatttaaattaaagagtttaatgacttggccaaaaatctagtaagaggagtgaac 79

                                                            
Query: 241 caggattggaacttatgtgagtttgttttcaaggtgccctgatttctta 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  caggattggaacttatgtgagtttgttttcaaggtgccctgatttctta 30


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)