BAC Information

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BAC

Clone NameMSMg01-312L24
Chromosome10 (Build37)
Map Location 27,144,007 - 27,144,295
singlet/doubletsinglet
Overlap geneLama2
Upstream geneLOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312L24.T7 (MSMg01no312_l24.b1)MSMg01-312L24.TJ (MSMg01no312_l24.g1)
ACCAG434880AG434881
length788742
length of high quality
(start - end)
292 (40 - 331)292 (68 - 359)
definitionCHROMAT_FILE: MSMg01no312_l24.b1 PHD_FILE: MSMg01no312_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:54 2005CHROMAT_FILE: MSMg01no312_l24.g1 PHD_FILE: MSMg01no312_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTCTGCTGGTAAATCACAGTGGCTCAGCCATTTAAAGCTCTCTCGCTCTC
TTTTTTTTTCTTTTTGAGGACATCAGACTAAACCTAGAAAGATAAGAAAT
AGCTAAAACATATCCTCTGTTCAGAAAGGGCTTGTGTCATTCTGTTCCAA
TGAGAACACATAAATGGGAAGTATTCACAAGTCTCTCTCTCCTTCTCTCT
CTCTTTCTCCCTCTCTCTCTCTCTCCTCCCCCCTCCCCTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACTGTGTGTATGCTCAAC
AAAGAAACTGTTTTTTTTTTTTCCCCCCCCCCCCCCCCAATATTTTATTG
AATAAGGTTTCATTGATTCCCCACCATGAAAAAAAAAAAAAATCTGTGGG
GGGGGGGTTGTATTTGTTTCTCTTTTCACACTTATGCCATTTCTAATGCG
ACTTATACTACCCCTCCCATTCCGAAACTGATCCATTTTTAAATCTCCCA
TATTTCATGCATTTATTCTCGCTATTCTCTACTTATGCTCGAATATTCTG
ACGATTTCTTGTCCATGCTCATATATCCACTCAATTTTACACGGATATAA
AGGCCAATATCAACCCCTATTACTTCTCCAATTATTTCTCCCTCCCTTAA
TCTCACCGTTTTATTCACCTATTATACTTACTCCTTTTATCTATTTCCCC
AATTATCAACCCTATATTTAGTTTTATATTCCCGCCCG
GTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTTTCATGTGTGTGTTCTTCCCCGTGCTCTTT
TTTTTTTTTACATTTATTTATTTATTTGTAGTGGGGATATACAAATGATG
TGGTGAATGTGTGTGGTCAGAGATCAGTTTGGAAAAGTCAGAACTCTTTT
CGCCCTCTGAGTTCTAGATATACAAACATGACATTAAGCTTGGGCAAATA
CCCTTAGTCAAGGAGCCATCTCCTCTCTCCCCTGGGCTCTGTGACTGTCT
TTGTTACAGCCATTTGCAGTGTGTTTGAAAAGTGGGTCTAGGATAAGTGA
TTTAAATTTATTTTTTTTAAACACCCCCTCCCCACATACATTTATGATGG
CTTAAATTAGTGTAGCACCTTATAATTTAATGATATTATACAGAAGCCGT
ATACCCTTGGACCAGAAGATCTATTTTCATCTCTGTTGTTATTATTCCCA
CAGGGCTAACTTAAAACCTAAGGCTTGGAGTACTAGCCAAGGAAGTTCAC
ATAACTGATGAGAATATTGTTTTCAGAAACTAAAAGTATGCCAAGTACAG
TTCATGTTCACATTCCCTTTTCTTGGGGCTATGGTCTCTTTCTTTTCCTT
TTAGAAGGTTGTTTCAACTTTGATATTGCTTATCAGCAATACTCACTGAA
TGTGGTTTGACTAAAAAAAGGTGGGTTTTGGCTAACATCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_l24.b1 MSMg01no312_l24.b1 CHROMAT_FILE:
MSMg01no312_l24.b1 PHD_FILE: MSMg01no312_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:54 2005
         (292 letters)



>mm_chr10_27143803_27144493
          Length = 691

 Score =  534 bits (276), Expect = e-156
 Identities = 286/290 (98%), Gaps = 3/290 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattctgctggtaaatcacagtggctcagccatttaaagctctctcgctctcttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 205 gaattcattctgctggtaaatcacagtggctcagccatttaaagctctctctctct-ttt 263

                                                                       
Query: 65  ttttttctttttgaggacatcagactaaacctagaaagataagaaatagctaaaacatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttttttctttttgaggacatcagactaaacctagaaagataagaaatagctaaaacatat 323

                                                                       
Query: 125 cctctgttcagaaagggcttgtgtcattctgttccaatgagaacacataaatgggaagta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctctgttcagaaagggcttgtgtcattctgttccaatgagaacacataaatgggaagta 383

                                                                       
Query: 185 ttcacaagtctctctctccttctctctctct--ttctccctctctctctctctcctcccc 242
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 384 ttcacaagtctctctctccttctctctctctctttctccctctctctctctctcctcccc 443

                                                             
Query: 243 cctcccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctcccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 691
Length adjustment: 9
Effective length of query: 283
Effective length of database: 682
Effective search space:   193006
Effective search space used:   193006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)