BAC Information

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BAC

Clone NameMSMg01-312P19
Chromosome10 (Build37)
Map Location 48,343,872 - 48,344,157
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041663, LOC100042398
Downstream geneLOC546562, LOC100041689, Grik2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312P19.T7 (MSMg01no312_p19.b1)MSMg01-312P19.TJ (MSMg01no312_p19.g1)
ACCAG435050AG435051
length734731
length of high quality
(start - end)
301 (432 - 732)289 (69 - 357)
definitionCHROMAT_FILE: MSMg01no312_p19.b1 PHD_FILE: MSMg01no312_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:11 2005CHROMAT_FILE: MSMg01no312_p19.g1 PHD_FILE: MSMg01no312_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCAAATATTCTCGAATTGCTTTGGAGTACTTAAAGAAATGTTCAA
CATTCTTAGTTGTCAGATTAATGCAAATCAAACTGACCCCGAGATTCCAC
CTCAGACCAATCAGAATGGCTAAAATAAAAAATGCAGCTGATAGCAGATG
CTGTAGAGGATGTGGAGAACGAGGAACCCTCCCATATTGCTGTTGGAATG
GCATGCTGGTAAAACCACTTTGGAAATCAGTCTGTCGGTTCCTTAAAAAA
ATTGAAAAGAGTTCCTCCTGAGGACCCAGCTATACCACTCCTGGGCCTAT
ACCCAATAGATTTTCTTACATATAACACGGATACTTTCTTCACTATGCTC
ATAGTAGTCTTATTTACCCCACCCAGAAGCTGGAAACAACCCACATGTCC
CTCAACAGAAGAATAGATACTGGAAATGTACACAATGGAGTACGGTGCTC
TTAAAATTCTTGAATTTTTGTAGTGTTTTGTTTAGAGTTGAGAATCTAAA
TTTATCCTTTTTCATCTTAGTATATTAATTAGTGTTGTACATTTCAAGGT
ACTATTTAGGCAAACATTTTATTGTTACTGCCAACTTGTAGCTTTTTTGA
CATGCCCTGAAGTTGCAATACCACAGAAAATTGTTATTCCACTGGCCCGT
AGATTTCTTTCATTCTCTATTCAACAATGTTATC
ACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTTATTGTTCCTGGTTTGTCTTAAATTCCTC
TAGACTTTACAATGCCTCTGCCACATCATGCTATATTGCTATGTCTAATA
TTCTAGGATTATGAGCAGGCATGGAAAATCTCCCTCTCTCCTTGCTCCCA
TATTAGTCTTAGTTAATTCGTGTATATCTGGGTCCCAAGTATGGAATTCC
TATACTGTTTTTTTGTACCCAATAAAGAATTAAGTTTGCTTCCCATTCAG
TATAGTGGGGGATTTCTGAGATGACTCTCAATAAATGATTTTCAATCTTA
TCTGATTTTTTTTTTGTACCCCCCCACAACACGTTTGAAAATATTATCCC
TGTTATAAATGTCCCCCAGTATAAAAAATATTATTTTACATATATAATTA
AAAAACTGGATGTTACATGACTTTTTGCTGAGGAGGAATGTGTATTGAAT
TTAAAGTAATCTAGAAAGTATATGTGTCATAAACATTTCTGTCTGTATTT
ATCGAGAAATTTCAATGAAGAGTCCCATACTTGCTTCAAGGACAAATGAC
ATTTTATAGCATTAATCTACACATGGAAGTCCTCAAAATGTTTAAATATT
GCTTCTAATGAAGAGTGAACATGAGACAGAATATCCATCTCCAGAGGAGA
ACCACATATTTTATGTAAATTTCAGCTCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_p19.g1 MSMg01no312_p19.g1 CHROMAT_FILE:
MSMg01no312_p19.g1 PHD_FILE: MSMg01no312_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:11 2005
         (289 letters)



>mm_chr10_48343672_48344359
          Length = 688

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttattgttcctggtttgtcttaaattcctctagactttacaatgcctctgccacatca 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttttattgttcctggtttttcttaaattcctctagactttacaatgcctctgccacatca 427

                                                                       
Query: 61  tgctatattgctatgtctaatattctaggattatgagcaggcatggaaaatctccctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgctatattgctatgtctaatattctaggattatgagcaggcatggaaaatctccctctc 367

                                                                       
Query: 121 tccttgctcccatattagtcttagttaattcgtgtatatctgggtcccaagtatggaatt 180
           ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 366 tccttgctcccatatcagtcttagttaattcgtgtatatctgggccccaagtatggattt 307

                                                                       
Query: 181 cctatactgtttttttgtacccaataaagaattaagtttgcttcccattcagtatagtgg 240
           ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 306 cctatactgtttttt-gtacccaataaagaattaagtttgcttcccattcggtatagtgg 248

                                                          
Query: 241 gggatttctgagatgactctcaataaatgattttcaatcttatctga 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gggatttctgagatgactctcaataaatgattttcaatcttatctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space:   190120
Effective search space used:   190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)