BAC Information

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BAC

Clone NameMSMg01-313B04
Chromosome10 (Build37)
Map Location 17,117,263 - 17,218,544
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC382457, LOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313B04.T7 (MSMg01no313_b04.b1)MSMg01-313B04.TJ (MSMg01no313_b04.g1)
ACCAG435109AG435110
length1,2571,262
length of high quality
(start - end)		816 (39 - 854)380 (72 - 451)
definitionCHROMAT_FILE: MSMg01no313_b04.b1 PHD_FILE: MSMg01no313_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:21 2005CHROMAT_FILE: MSMg01no313_b04.g1 PHD_FILE: MSMg01no313_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,218,114 - 17,218,544)(17,117,263 - 17,117,635)
sequence
NGGATTGNNNNNNGGTCATTGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTGTCCCACTTACCTGGGAGCTTTCCAGCCAGCTACCCTGACCT
CTTGAAGTTCTGGACCTGCAGTGCTCTCGAGAAGCAGAAGTCTCTTTACG
GGTTCCACCACTTGTCGCATCCTCCCGGACCAGCAGGAAAGACGCAACAC
CATGTTGTCCTTCTTCAAGCAGGTTTATTCAGGAACACTTCACATTGCAA
TGCAGGAACGGGAATCTCCCCCCCCCAACAACCCCGGGGCACGCCTTAAA
TACCCTACTGACTCCTCCCAATCACCCCAGTCACATAATGGCAGTCCATT
GGTTCACAGCAAATGACACCTCAGGCGAGCTGACGAGGCATGGCGTCTGT
GCAGTGCAGGCCGCTGGGATGTGGCTAAGTCTGAGGTAATGAGAAAGTCA
GGCGCAGGTCATAAGACCTAGCAGCCGACCTGGGCACCATCTTGGGGCAG
CGGCCGCACCCGCTCCTCACACATATACAGACTAATAGGGAACTTCTTAT
GTGCCTACTATATTTCTGAGAACCGTACATGTGTTAAATTATTTAATGAT
TAAAAAAAGTTCAGAAAGTAGTAATTATTTCTATCTTACAATTGATGAAA
TTGATACTTGGAGAGGTTATAAACATGTACCATTGTCAAATTCTGGCCCC
AAAGGGAAGAGGAAAGGAATTCCCAAACTGTCTTTAGAAGCATCCCAACT
ATAGCTTCTGCAGTTTTCTCCACTGGTCTGTCTTTCACCAGAGAAAGGTC
TGTATGACTGTGTGGTTAGTTTTAATTGTTAGCCTGCCACACCCTATAAT
CACCTGGGAAGAGAGGCTTGATGGGGGATTATTTATCCTATTTTGGCCTT
TAGGTCTATCTGTTGGTGATTGTCATGTTTGCCTTANTTGNGTAAAAGAA
ACCCGCCTGACTGTGGGCAGCTCCTTCTGGGACAAGGCCTTTGTCTAATC
CCCAGAGGGCGGTCCCGAAAAATGCCCTTACAAACAAAGGTAAAGGGGCC
CCTAAGGCCCCCTCCCTATTATATTACCGGGTGTAAAAGAATTTTCCCCC
CTTTTTTTTTGTGGGGCTAAACCTTCCTTTTCTCTGGGGAAGACAACCCC
CCCCGGGGTTGGTGTGGGGGGAAAAATATAAAAACACACTCCTTCTACTT
TTATTTCGTCTGAGGAAGAAACAATCTCTCTGACACACCTCCGTGTTTCT
CTCCGGT

NNNCCGCTGAGGCGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATCCCCAATAGTGCCAACAAACCCCCTT
AAGCTACTTTTCCTGTCCAGAAGCCCAGTTTCTAATTTGAAAATAAATCA
AATTACATACAAAAATGTTCAGAAAACATTTCGGGGTGACCAAGCTGTAA
GAACTTCATGGGTTCATTTCCAAAGAGGAAGGTGGTACAAGGAGATGGGC
ACCTGCTGTACTATACTAAACTGTGTGCCTATCTGTGAGTGAGGAAGCAA
AACTAGTCTGGAGAAACAAAGAGAAAATAGCAGACCAGCAGTTTTAACAA
ATCCACAAAGCTGTAGAGACAGAAATGGATTATGAGGCTACTAACTCTTA
TTGAGGGGCTGACATTCTGGAGAAGAGAAAATCACAGAGAAGAGAGTTTT
TTTTTTTCCCCCCCCCCANANNNCCCCTCCCCCCCAAAAAAAAAGGGGGG
GGNNTNNNGNNNNNNTCNNNCNNGCCNNGTGTGTCTCCCTCGCTTCGCTC
CTCCTNTGCGTTCTGGTGCTTCGTGCTCGCGTCTTCTGCTCGTGCGCCTC
TCTTTCCTCCGTGCGCCCCCCCGCGTTCTTTGGTCTTGCTNCCTTCCCCC
CCTTGTCCTTCTCGCTCTTCGCCGCCTCCCTCCTGTCTCCGGTTCTCCCC
CCTTTCTGTTCTCCCCCTGCCGGCCTCCCCGCCGTCGCTGCCTCCTCCTT
GTCCTCCTTGCCCTCCTCTTTTTCCCTCCCCCCTNCTCTCCCCCTGCGTC
CCTCGTTTGTTTCTCCCTCCTCTCCCCCTTCCCCCCCTCCCCTCCCTTCT
TCTTCCCCCCTCTTCCTTTCTCCTCCTCCCCTCCCTCCCCCTTCCTCTCT
CCTCCCTCTTCCTTTCCCCCCTCCCTTCCCCTTCTCCTCTCTCCTCTCTT
TCCTGCCCCTCTCCTCTTCTCCTCTCCCCTCTTCCCTTCTTCCCCCTCTC
CCCCCTCCTCCTCCCCTTTCCCCCTCCCCCTCTTCGTTCCCCTTGTCCCC
TCTCTCTCCCTTCCCCTCTCCTTCCCCCCTTCTCCTTCCGTCTCCTTCCC
CTCCCTTCTCCTCTCCCCCTCTTCCTTCTCCCCCCCCTCTCCTCCCTCCT
TCCTCTTCTCTCCCTCTCTCCCTCTCTTCCCCTTCTCCNCTCCTCTTTCT
CTCCTCCCTCTCTCCTCCCCCCTCCTCCCCTCCCCTTCTCCCTTCTCTCT
CCTCCCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_b04.b1 MSMg01no313_b04.b1 CHROMAT_FILE:
MSMg01no313_b04.b1 PHD_FILE: MSMg01no313_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:21 2005
         (816 letters)



>mm_chr10_17217329_17218544
          Length = 1216

 Score =  803 bits (415), Expect = 0.0
 Identities = 427/431 (99%)
 Strand = Plus / Minus

                                                                        
Query: 386  gctaagtctgaggtaatgagaaagtcaggcgcaggtcataagacctagcagccgacctgg 445
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1216 gctaagtctgaggtaatgagaaagtcaggcgcaggtcataagacctagcagccgtcctgg 1157

                                                                        
Query: 446  gcaccatcttggggcagcggccgcacccgctcctcacacatatacagactaatagggaac 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1156 gcaccatcttggggcagcggccgcacccgctcctcacacatatacagactaatagggaac 1097

                                                                        
Query: 506  ttcttatgtgcctactatatttctgagaaccgtacatgtgttaaattatttaatgattaa 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 ttcttatgtgcctactatatttctgagaaccgtacatgtgttaaattatttaatgattaa 1037

                                                                        
Query: 566  aaaaagttcagaaagtagtaattatttctatcttacaattgatgaaattgatacttggag 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 aaaaagttcagaaagtagtaattatttctatcttacaattgatgaaattgatacttggag 977

                                                                        
Query: 626  aggttataaacatgtaccattgtcaaattctggccccaaagggaagaggaaaggaattcc 685
            ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||
Sbjct: 976  aggttataaacatgtaccattgtcaaattctggccccaaagggtagaagaaaggacttcc 917

                                                                        
Query: 686  caaactgtctttagaagcatcccaactatagcttctgcagttttctccactggtctgtct 745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  caaactgtctttagaagcatcccaactatagcttctgcagttttctccactggtctgtct 857

                                                                        
Query: 746  ttcaccagagaaaggtctgtatgactgtgtggttagttttaattgttagcctgccacacc 805
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  ttcaccagagaaaggtctgtatgactgtgtggttagttttaattgttagcctgccacacc 797

                       
Query: 806  ctataatcacc 816
            |||||||||||
Sbjct: 796  ctataatcacc 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 816
Length of database: 1216
Length adjustment: 10
Effective length of query: 806
Effective length of database: 1206
Effective search space:   972036
Effective search space used:   972036
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no313_b04.g1 MSMg01no313_b04.g1 CHROMAT_FILE:
MSMg01no313_b04.g1 PHD_FILE: MSMg01no313_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:21 2005
         (380 letters)



>mm_chr10_17117063_17117842
          Length = 780

 Score =  659 bits (341), Expect = 0.0
 Identities = 365/373 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   catccccaatagtgccaacaaacccccttaagctacttttcctgtccagaagcccagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 201 catccccaatagtgccaacaaacccccttaagctacttttcctgtccagaaggtcagttt 260

                                                                       
Query: 61  ctaatttgaaaataaatcaaattacatacaaaaatgttcagaaaacatttcggggtgacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaatttgaaaataaatcaaattacatacaaaaatgttcagaaaacatttcggggtgacc 320

                                                                       
Query: 121 aagctgtaagaacttcatgggttcatttccaaagaggaaggtggtacaaggagatgggca 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 aagctgtaagaacttcatgggttcatttccaaggaggaaggtggtacaaggagatgggca 380

                                                                       
Query: 181 cctgctgtactatactaaactgtgtgcctatctgtgagtgaggaagcaaaactagtctgg 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 cctgctctactatactaaactgtgtgcctatctgtgagtgaggaagcaaaactaggctgg 440

                                                                       
Query: 241 agaaacaaagagaaaatagcagaccagcagttttaacaaatccacaaagctgtagagaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaacaaagagaaaatagcagaccagcagttttaacaaatccacaaagctgtagagaca 500

                                                                       
Query: 301 gaaatggattatgaggctactaactcttattgaggggctgacattctggagaagagaaaa 360
           ||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||
Sbjct: 501 gaaatggattatgaggctactaactcaaaatgaggggctgacattctggagaagagaaaa 560

                        
Query: 361 tcacagagaagag 373
           |||||||||||||
Sbjct: 561 tcacagagaagag 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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