BAC Information

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BAC

Clone NameMSMg01-313B13
Chromosome10 (Build37)
Map Location 121,765,884 - 121,766,288
singlet/doubletsinglet
Overlap genenone
Upstream gene4930505D03Rik, LOC100043498, Gns, Rassf3, LOC100043500, Tbk1, Xpot, D930020B18Rik, BC048403, Srgap1, EG216394, LOC668272, Tmem5, LOC100043513, LOC668275
Downstream geneAvpr1a, Ppm1h, D630033A02Rik, Mon2, Usp15, LOC100042958, AI851790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313B13.T7 (MSMg01no313_b13.b1)MSMg01-313B13.TJ (MSMg01no313_b13.g1)
ACCAG435125AG435126
length1,2321,261
length of high quality
(start - end)
421 (32 - 452)381 (73 - 453)
definitionCHROMAT_FILE: MSMg01no313_b13.b1 PHD_FILE: MSMg01no313_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:24 2005CHROMAT_FILE: MSMg01no313_b13.g1 PHD_FILE: MSMg01no313_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCGCACTGGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAAT
TCATATTGATTCGTAAGCAATAAAAAAATCAAATTATAGACTAATCATAG
AGCACAAGATGTTATGCATTATGTCCCCAGCAAAAATTACGTTTTCCTTC
ATTGGATGTGAAAATATAACCCATGTATTATTTTTATAGTAAAACATAGT
ATTGTACACAAATTCTGGGAGCCAAAATGATCAGATACGGTTGGTAGATG
TCCATTGTGTAAAATGCATGAATAAAAGAACAGTTCCTGGAAGTGGGGAG
AGGAGGGGAAGAAAGCTGAGGAGAGCAGAGGAGGGAAGAGTGTGTTTTCT
TAATTCCTTGCAGGCAACAAATTTCCCAACACTGCAATGCTGTTGGGTTT
TTTGGAATTGGAACTAAGACTAAGAGTCAATGTGGAACTACGACTTTTTT
TTTTTTTTTTANCCCCCGCTTCTTTAGACCTATGTTATTAAAAAAAGATG
GACTCAATGGAGAGATTGCTCAGTGCTTAAGAGCAATGGCTGCTCTTCTG
AAGGATCTGGGTTTCAATTCCCAGCCCCCACATGGCAGCTCACAACTGTC
TGTAACTCCAGTTCCAGGGGATCTGACAGCTTCACACAGGCACACGTGCT
GGCAAAATACCAATGACATAAAATAAAAATAAATCTTTTTTTTTTTTTGA
GAAGGGGGATGGAGAATTGGCTCAGCAGTTAAGAACATTTCTTGAAGAGG
TTGAGTTCAATTCCCAGCAACCTGATGTTGGCTCGCAACCCTCTGTAATG
TGTCGTATGCTTTCTTTTGGCTTGCACTCATCCTGCACGCACAACCACTC
CCCCTTCTATCTCTACATTTTCATAAGTGAAAACTTCATTCCTTAACAAT
TTGACCCCTCAATTGGATAACTTAAGCCACACATGACCCTTACATTGCTC
CCAAAATTGCTTCCTCTACCAGCCTTTCCCTTGAAATTGTTAGCCCTATA
CTTCTTTTTTTCCTCTCTTTCTCCCCCTACTCCTTTTCACACCACCTTTT
TTCCCCAGTTTTCATCACCCTCCATAAACTCCTCTCTCTCTCTATTTCTC
CTTATCATTTCCACTCTGCTATCCCCTCATCTCTCATTCATATACCTCTT
CCTTCCCACCTTCAACTCCCTTCTGCTCAACATCATCTTTACCCTAATCT
CAATTCTACTATTCCACCATTCTTATTAATTC
NNNCCATTGAGGAGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACAGAATGGCTGAGA
AGCACCTGAAAAAAGTTCAGCATCCCTAATTATCAGGGAAATGCAAATCA
AAACTACCCTGAGATTCCATCTCACACCATTCAGAATGGCTAAGGTCAAA
AATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCCAGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGATCCTGTAATACCTCTCCTGGGCATATATCCAGAAGATGTTTC
AGCTGGTAAGAAGGACACATGTTCCACTATGTTCATAGCAGCCTTATTTA
TAATAGCCAAAAGCTGGAAAGAATCCAGATTCCCCACAACAGAAAAATGG
ATTTTTTTTACCCCCCCCTTTTTCTTTCTTTTAACCATTGAAAAAAAGGG
CGCCCACTCCCAGAATTTCCCATGACTGAAATCAGATACTATGTTGCCAT
TTGTAACTTCTCTCTACCTTAACAATGCCCATTCAAATTTCGTCCACATC
TTTCTTTCTTTCTTTTTTTCTTTTTCTTTTCTTTTTTCTTTTTCCTTTTT
TTGTTTTTTAGAGACAGGGTTTCTCTGTGTAGCGCTGGCTGTCCTGGAAC
TCACTCTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCGATTACCTCTG
CCTCCTGAATGTTTCGATTAAAGGCGTGTGCCACCACCGCCGGGCTCGTG
CACATCTTTCTTAAAGTAAATTATAGGAAAATGTTAAGATGTTTGTAGAG
AAAAGAATTGAAAATAAAACTAAGATGTCATTTTGTAATTCTCAGGCTTT
ACTGGGATGCTTGTTCCATAGCTAAGAACCGGAACAATTTGCTTTGATAA
ACCCATGAATGGATGAAGAAAAGGGGGTGTGACTCCTCATTCCTGACCAC
CTGGACAGATCCTCGGAACTTTGCTTTAAATGAAATATCCGGGCCCGGGA
AATTAACCCCCTGTAACTTTTTTTAATGGGACCCTAGGGAATTGATCCCC
CCAAGTAAAAAAAACTTTGTTCTTTGGATAAGGGAAAGTGTCCTTGGTCC
CCGGAAAATAAAAATAGGAGGAAGGGGAAGAAAAATAAAAACCGGCCTCT
CAATTCGGTAAAAAAAAAAAGAACTCGTGGGGGACTCCCCCCCCTATATA
AATCACAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_b13.b1 MSMg01no313_b13.b1 CHROMAT_FILE:
MSMg01no313_b13.b1 PHD_FILE: MSMg01no313_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:24 2005
         (421 letters)



>mm_chr10_121765669_121766489
          Length = 821

 Score =  669 bits (346), Expect = 0.0
 Identities = 390/414 (94%), Gaps = 18/414 (4%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattcatattgattcgtaagcaataaaaaaatcaaattatagactaatcatagagcaca 75
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 216 gaattcatattgattcttaagcaataaaaaaatcaaattatagactaatcatagagcgca 275

                                                                       
Query: 76  agatgttatgcattatgtccccag----caaaaattacgttttccttcattggatgtgaa 131
           ||||||||||||||||||    ||    ||||||||||||||||||||||||||||||||
Sbjct: 276 agatgttatgcattatgt----aggtaacaaaaattacgttttccttcattggatgtgaa 331

                                                                       
Query: 132 aatataacccatgtattatttttatagtaaaacatagtattgtacacaaattctgggagc 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aatataacccatgtattatttttatagtaaaacatagtattgtacacaaattctgggagc 391

                                                                       
Query: 192 caaaatgatcagatacggttggtagatgtccattgtgtaaaatgcatgaataaaagaaca 251
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 392 caaaatgatcagatacagttggtagatgtccattgtgtaaaatgcatgaataaaagaact 451

                                                                       
Query: 252 gttcctggaagtggggagaggaggggaagaaagctgaggagagcagaggagggaagagtg 311
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 452 gttcctggaagtggggagaggaggggaagaaagctaaggagagcagaggagggaagagtg 511

                                                                       
Query: 312 tgttttcttaattccttgcaggcaacaaatttcccaacactgcaatgctgttggg----- 366
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 512 tgttttcttaattccttgcaggcaacaaatttcccaacactgcaatgctgttgggcacaa 571

                                                                 
Query: 367 ttttttggaattggaactaagactaagagtcaatgtggaactacgacttttttt 420
           |     |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 572 t-----ggaattggaactaagactaagagtcaatgtggaacttcgacttttttt 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)